Genomics of Genebanks

The last few decades have seen an extraordinary growth in genetic data both characterizing the genetic architecture of quantitative trait loci and the structure and evolutionary relationships among entire genomes. Much of the success of these studies can be traced to ready access to the diversity maintained in genebanks. This workshop is intended to consider the opportunities and impediments that come with integration of genomic data that is likely to come from all quarters of global germplasm collections.  What are the key resources and analytical approaches that are needed efficiently maintain and mine these collections for important variation?  The workshop seeks to explore the relationship between genomic information and the way it can be applied to improving genebank efficiency in ways that anticipate both new uses and new users.

Organizers:
Clarice J. Coyne(USDA-ARS/Washington State University) and Chris Richards(USDA ARS Nat'l Ctr for Genetics Resources)
Date: Saturday, January 14, 2012
Time: 10:20 AM-12:30 PM
Room: Golden West
10:20 AM
Identification of SNP Haplotypes and Prospects of Association Mapping in Watermelon
Padma Nimmakayala, Gus R. Douglass Institute and Department of Biology, West Virginia State University; Yan Tomason, Gus R. Douglass Institute and Department of Biology, West Virginia State University; Gopinath Vajja, Gus R. Douglass Institute and Department of Biology, West Virginia State University; Lakshmi Abburi, Gus R. Douglass Institute and Department of Biology, West Virginia State University; Venkatramana Pegadaraju, BioDiagnostics; Asela Wijeratne, Ohio State University; Amnon Levi, USDA, ARS U.S. Vegetable Lab; Umesh Reddy, Gus R. Douglass Institute and Department of Biology, West Virginia State University

10:45 AM
Genotyping-by-sequencing: a Case Study in Barley
Yong-Bi Fu, Plant Gene Resources of Canada

11:35 AM
Harnessing Available Genetic Variation Using the Maize Allelic Diversity Platform at Syngenta
Satya Chintamanani, Syngenta Biotechnology Inc.; Tommy Williams, 12101 Thorps Road; Todd Warner, 317 330th Street; Jason Cromley, 2369 330th Street; Tom Prest, 2369 330th Street; Kari Kust, 317 330th Street; Elhan Ersoz, Syngenta Biotechnology, Inc.; Molly Dunn, Syngenta Biotech.; Lynn Senior, 3054 Cornwallis Rd; Sarah Forrester, 3054 Cornwallis Rd; Joseph D. Clarke, 3054 Cornwallis Rd; Homer Caton, 2369 330th Street

12:00 PM
Developing an in silico Rice Genebank
Kenneth L. McNally, International Rice Research Institute; Ruaraidh Hamilton, International Rice Research Institute; Hei Leung, International Rice Research Institute

12:25 PM
Discussion


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