Computer Demos (4)

Organizer:
David E. Matthews(USDA-ARS-Cornell University)
Date: Wednesday, January 18, 2012
Time: 10:20 AM-12:30 PM
Room: California
10:20 AM
C23
Computational Approach for Learning an In vivo Interactome Model for Bovine Salmonellosis Pathogenesis
Kenneth Drake, Seralogix; Garry Adams, Texas A&M College of Veterinary Medicine; Sara Lawhon, Texas A&M College of Veterinary Medicine

10:35 AM
C24
MOA - A Lightweight Bioinformatics Workflow Framework aimed at Reproducible Research
John A. McCallum, New Zealand Institute for Plant and Food Research; Mark Fiers, New Zealand Institute for Plant and Food Research

11:05 AM
C26
Quick and easy 2nd order genome assembly: Syntenic Path Assembly using CoGe
Eric Lyons, iPlant Collaborative/University of AZ

11:20 AM
C27
iPlantTF: The Web Server That Identifies Plant Transcription Factors at The Genome Scale
Xinbin Dai, The Samuel Roberts Noble Foundation; Patrick Xuechun Zhao, The Samuel Roberts Noble Foundation

11:35 AM
C28
MAPHiTS: an efficient workflow for SNP detection
Nathalie Choisne, URGI - INRA de Versailles; Marc Bras, URGI - INRA de Versailles; Nacer Mohellibi, URGI - INRA de Versailles; Sandie Arnoux, URGI - INRA de Versailles; Olivier Inizan, URGI - INRA de Versailles; Anne-Francoise Adam-Blondon, URGI - INRA de Versailles; Hadi Quesneville, URGI - INRA de Versailles

11:50 AM
C29
CisSERS: Customizable in silico Sequence Evaluation of Restriction Sites
Richard Sharpe, Molecular Plant Sciences Graduate Program, Washington State University; Tyson Koepke, Molecular Plant Sciences Graduate Program, Washington State University; Artemus Harper, Department of Horticulture, Washington State University; John Grimes, Department of Horticulture, Washington State University; Amit Dhingra, Molecular Plant Sciences Graduate Program, Washington State University

12:05 PM
C21
The Triticeae Toolbox (T3): Containing Keys to Unlock the Triticeae Genome and Phenome
Victoria Carollo Blake, USDA-ARS-WRRC; David E. Matthews, USDA-ARS-Cornell University; Clay Birkett, USDA-ARS; John Lee, USDA-ARS-WRRC; Peter Bradbury, USDA-ARS; Olin Anderson, USDA-ARS-WRRC; Jean-Luc Jannink, USDA-ARS