Coffee Genomics

Date: Sunday, January 13, 2013
Time: 3:50 PM-6:00 PM
Room: Sunset
Organizers:
Marcela Yepes , Philippe Lashermes and Rod A. Wing
3:50 PM
The Coffea canephora Genome
France Denoeud, CEA-Genoscope

4:10 PM
LTR Retrotransposons In The Robusta Coffee Genome (Coffea canephora): Identification and Charaterization Of Elements From BAC-End and 454 Sequences
Elaine Silva Dias, Laboratory of Molecular Evolution UNESP; Clemence Hatt, Institut de Recherche pour le Développement; Christine Dubreuil-Tranchant, Institut de Recherche pour le Développement; Alexis Dereeper, IRD, UMR RPB; Philippe Lashermes, Institut de Recherche pour le Développement; Serge Hamon, IRD, UMR DIADE; Michel Rigoreau, Centre R&D Nestlé Tours; Dominique Crouzillat, Centre R&D Nestlé Tours; Perla Hamon, Institut de Recherche pour le Développement; Claudia Carareto, Laboratory of Molecular Evolution UNESP; Alexandre de Kochko, IRD, UMR DIADE; Romain Guyot, Institut de Recherche pour le Développement

4:30 PM
Contribution Of Subgenomes To The Transcriptome and Their Intertwined Regulation In The Allopolyploid Coffea arabica L. Grown In Contrasted Temperatures
Marie-Christine Combes, IRD; Alexis Dereeper, IRD, UMR RPB; Benoit Bertrand, CIRAD; Philippe Lashermes, Institut de Recherche pour le Développement

4:50 PM
RNA-Seq Analysis and De Novo Transcriptome Assembly Of Coffea arabica and Coffea eugenioides
Priscila Mary Yuyama, CIRAD; Marcelo Falsarella Carazzolle, Genomics and Expression Laboratory- UNICAMP; Osvaldo Reis Júnior, Universidade Estadual de Campinas; Jaime Hikaru Mishima, Universidade Estadual de Campinas; Suzana Tiemi Ivamoto, Instituto Agronômico do Paraná; Douglas Silva Domingues, Instituto Agronômico do Paraná; Pierre Charmetant, Instituto Agronômico do Paraná; Thierry Leroy, CIRAD; Luiz Filipe Protasio Pereira, Embrapa Café

5:10 PM
FISH-Mapping Pachytene Chromosomes Of Coffee (Coffea L.)
Ana Amélia Sanchez Iacia, Instituto Agronomico; Cecília A.F. Pinto-Maglio, Instituto Agronomico, Campinas, Brazil

5:30 PM
The Genome Of Coffee Leaf Rust, The Most Devastating Pathogen Of Coffee, and Development Of Molecular Markers For Marker-Assisted Selection In Coffee Breeding Programs
Marco A. Cristancho, Centro Nacional de Investigaciones de Cafe, CENICAFE; Huver Posada, Colombian National Coffee Research Center (CENICAFE); Alvaro Gaitan, Centro Nacional de Investigaciones de Cafe, CENICAFE; William Giraldo, Colombian National Coffee Research Center (CENICAFE); David Botero, Colombian National Coffee Research Center (CENICAFE); Javier Tabima, Colombian National Coffee Research Center (CENICAFE); Diana Ortiz, Colombian National Coffee Research Center (CENICAFE); Alejandro Peralta, Colombian National Coffee Research Center (CENICAFE); Silvia Restrepo, Universidad de los Andes; Diego Riańo, Universidad de los Andes; Fernando Garcia, Colombian National Coffee Research Center (CENICAFE); Camilo Lopez, Universidad Nacional de Colombia; Marcela Yepes, Cornell University; Herb Aldwinckle, Cornell University

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