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Genome Sequencing & ESTs

Date: Monday, January 14, 2013
Time: 7:00 AM-10:00 PM
Room: Grand Exhibit Hall
An Innovative Solution to RNA-Seq Sample Prep From High Quality RNA
Jim Pease, Epicentre; Scott Kuersten, Epicentre; Fraz Syed, Epicentre (an Illumina company); Agnes Jancso Radek, Epicentre (an IIllumina comany); Ramesh Vaidyanathan, Epicentre (an Illumina company)

Assessing the Assembly Quality of Large Plant Genomes
Paul C. Bailey, The Genome Analysis Centre; B J. Clavijo, The Genome Analysis Centre; Jonathan Wright, The Genome Analysis Centre; Sarah Ayling, The Genome Analysis Centre; Mario Caccamo, The Genome Analysis Centre; Jane Rogers, The Genome Analysis Centre

Using NGS Data to Facilitate Plant Breeding
Igor Kardailsky, CLC bio; Mads Sonderkaer, Aalborg University; Roald Forsberg, CLC bio; Kare Lehmann, Aalborg University, DK

Strategies for Whole Genome, Transcriptome and Metagenomic 16S Sequencing with the Latest Next-Generation Sequencing Platforms
Chris Wright, University of Illinois W. M. Keck Center; Weruska Biase, University of Illinois W. M. Keck Center; Alvaro Hernandez, University of Illinois W. M. Keck Center

A Rapid End-to-End Workflow for Preparing rRNA-depleted and Directional Plant RNA-Seq Libraries
Roy Sooknanan, Epicentre (an Illumina® company); John Hitchen, Epicentre (an Illumina® company)

The International Wheat Genome Sequencing Consortium (IWGSC)
Kellye Eversole, IWGSC; The International Wheat Genome Sequencing Consortium, IWGSC, www.wheatgenome.org

Construction of the BAC Physical Map on Wheat Chromosome 6B for its Sequencing
Fuminori Kobayashi, National Institute of Agrobiological Sciences; Satoshi Katagiri, National Institute of Agrobiological Sciences; Wataru Karasawa, National Institute of Agrobiological Sciences; Yumiko Hanawa, National Institute of Agrobiological Sciences; Hiroyuki Kanamori, National Institute of Agrobiological Sciences; Yukiyo Ito, National Institute of Agrobiological Sciences; Hiroko Fujisawa, National Institute of Agrobiological Sciences; Yoshiyuki Mukai, National Institute of Agrobiological Sciences; Tsuyoshi Tanaka, National Institute of Agrobiological Sciences; Satoko Kaneko, Kyoto University; Shuhei Nasuda, Graduate School of Agriculture, Kyoto University; Shota Watanabe, Kyoto University; Toyotaka Sakaguchi, Kyoto University; Katsuyuki Hayakawa, Nisshin Flour Milling Inc.; Chikako Abe, Nisshin Flour Milling Inc.; Ryoko Ohno, Kobe University; Julio. C. M. Iehisa, Kobe University; Shigeo Takumi, Kobe University; Jaroslav Doležel, Institute of Experimental Botany; Yasunari Ogihara, Kihara Inst. Biol. Res., Yokohama City University; Takashi Matsumoto, National Institute of Agrobiological Sciences; Yuichi Katayose, National Institute of Agrobiological Sciences; Jianzhong Wu, National Institute of Agrobiological Sciences; Hirokazu Handa, National Institute of Agrobiological Sciences

Construction of Comprehensive Reference Transcripts from Three Homoeologous Genomes in Common Wheat
Kohei Mishina, Kihara Inst. Biol. Res., Yokohama City University; Yoko Kamiya, Kihara Inst. Biol. Res., Yokohama City University; Kanako Kawaura, Kihara Inst. Biol. Res., Yokohama City University; Keiichi Mochida, RIKEN Plant Science Center; Kaori Igarashi, Meiji University; Kentaro Yano, School of Agri., Meiji University; Hiroshi Tarui, RIKEN OSC; Naoko Suzuki, RIKEN OSC; Jun Kawai, RIKEN OSC; Yasunari Ogihara, Kihara Inst. Biol. Res., Yokohama City University

Analysis, Annotation, and Profiling of the Oat Seed Transcriptome
Juan Gutierrez-Gonzalez, USDA/ARS; David Garvin, USDA-ARS, PSRU

Greater than 10 kb Read Lengths Routine when Sequencing with Pacific Biosciences' XL Release
Cheryl Heiner, Pacific Biosciences; Susana Wang, Pacific Biosciences; Meredith Ashby, Pacific Biosciences; Yan Guo, Pacific Biosciences; Jason Underwood, Pacific Biosciences; Primo Baybayan, Pacific Biosciences

Genome Diversity in Brachypodium distachyon: Deep Sequencing of Highly Diverse Natural Accessions
Sean Gordon, USDA-ARS-WRRC; Henry Priest, Donald Danforth Plant Science Center; David L. Des Marais, The University of Texas at Austin; Wendy Schackwitz, DOE Joint Genome Institute; Ludmila Tyler, University of California, Berkeley/USDA; Doug Bryant, Donald Danforth Plant Science Center; Joel Martin, DOE Joint Genome Institute; Wenqin Wang, Waksman Institute, Rutgers University; Anna Lipzen, DOE Joint Genome Institute; Kerrie Barry, DOE Joint Genome Institute; Antonio Manzaneda, Universidad de Jaen; Christopher Schwartz, University of Wisconsin, GLBRC; Richard Amasino, University of Wisconsin; David Garvin, USDA-ARS, PSRU; Hikmet Budak, Sabanci University; Joachim Messing, Rutgers University; Metin Tuna, Namik Kemal University; Thomas Mitchell-Olds, Duke University, Dept. of Biology; Daniel S. Rokhsar, DOE Joint Genome Institute; Len Pennacchio, DOE Joint Genome Institute; Ana Caicedo, University of Massachusetts; Samuel P Hazen, University of Massachusetts; Thomas Jeunger, University of Texas at Austin; Robert Hasterok, University of Silesia; John Doonan, John Innes Centre; Pilar Catalan, University of Zaragoza; Luis Mur, Aberystwyth University; Todd C. Mockler, Donald Danforth Plant Science Center; John Vogel, USDA, ARS, Western Regional Research Center

An RNA-Seq Approach to Study Vernalization and the Induction of Flowering in Perennial Ryegrass
Cristiana Paina, Molecular Biology and Genetics, Aarhus University; Stephen Byrne, Aarhus University; Torben Asp, Molecular Biology and Genetics, Aarhus University

De novo Transcriptome Analysis in Perennial Ryegrass
Jacqueline D. Farrell, Molecular Biology and Genetics, Aarhus University; Stephen Byrne, Aarhus University; Torben Asp, Molecular Biology and Genetics, Aarhus University

RNA-Seq and Genome Sequencing of Lolium tenmulentum, a Relative of Perennial Ryegrass
Hongwei Cai, China Agricultural University; Sanzhen Liu, Iowa State University; Wei Wu, Iowa State University; Nana Yuyama, Forage Crop Research Institute, JGFSA; Mariko Hirata, Forage Crop Research Institute, JGFSA; Xuanli Guan, China Agricultural University; Eddy Yeh, Iowa State University; Patrick S. Schnable, Iowa State University

Development of Genomic Tools for Germplasm Characterization and Breeding of Brachiaria ruziziensis, an Important Forage Species in the Tropics
Marco Pessoa-Filho, Embrapa Cerrados; Pedro I.T. Silva, Dupont Pioneer; Alexandre Martins, Embrapa Recursos Genéticos e Biotecnologia, Genetics Lab; Ediene G. Gouvea, Embrapa Recursos Genéticos e Biotecnologia, Genetics Lab; Márcio E. Ferreira, Embrapa Recursos Genéticos e Biotecnologia, Genetics Lab

De novo Transcriptome Profiling of Two Edaphically and Phenotypically Divergent Grasses: Dominant Forage Grass Big Bluestem Andropogon gerardii and Drought-Tolerant Sand Bluestem Andropogon gerardii ssp. hallii
Jennifer M. Shelton, Kansas State University; Miranda Gray, Kansas State University; Susan J. Brown, Division of Biology - Kansas State University; Sanjay Chellapilla, Kansas State University, Bioinformatics Facility; Alina Akhunova, Kansas State University; Eduard Akhunov, Kansas State University; Xuanqiang Liang, Crop Research Institute, GAAS; Loretta C Johnson, Biology, Kansas State University

Assembly and Validation of an Evolutionary Reference Genome for Flowering Plants (Amborella trichopoda)
Srikar Chamala, University of Florida; Brandon Walts, University of Florida; Andre Chanderbali, University of Florida; Victor A. Albert, University of Buffalo; Saravanaraj Ayyampalayam, University of Georgia; James Burnette, University of California, Riverside; Claude dePamphilis, Penn State University; Joshua P. Der, Penn State University; Jamie Estill, University of Georgia; Tianying Lan, University at Buffalo; Jim Leebens-Mack, University of Georgia; Seunghee Lee, Arizona Genomics Institute, University of Arizona; Hong Ma, State Key Lab of Genet Engin, Sch of Life Sci, Fudan Univ; Rich Moore, OpGen, Inc.; Jeff Palmer, University of Indiana; Paula Ralph, Penn State University; Danny Rice, Department of Biology, Indiana University; Steve Rounsley, Dow Agrosciences; Stephan C. Schuster, Pennsylvania State University; Lynn P. Tomsho, Pennsylvania State University; Susan Wessler, University of Californa Riverside; Yeisoo Yu, Arizona Genomics Institute, University of Arizona; Yuannian Jiao, Penn State University ; Nianqing (Nick) Xiao, OpGen, Inc.; Douglas E. Soltis, University of Florida; Pamela S. Soltis, University of Florida; Brad Barbazuk, University of Florida

Deep Sequencing-Based Transcriptome of Brachiaria brizantha Ovaries as a Tool for Development Studies of Sexual and Apomictic Plants
Vera Tavares de Campos Carneiro, University of Brasilia; Orzenil Bonfim Silva-Junior, EMBRAPA Recursos Genéticos e Biotecnologia; Erica Duarte Silveira, Pontificia Universidad Catolica Argentina; Larissa Arrais Guimarães, University of Brasilia; Marcos Mota Costa, Embrapa Genetic Resources and Biotechnology; Roberto C. Togawa, Embrapa / Cenargen; Julio Carlyle Rodrigues, Embrapa Recursos Genéticos e Biotecnologia, Brasília-DF; Ana Luiza M. Lacerda, University of Brasilia; Diva Maria de Alencar Dusi, Embrapa Recursos Genéticos e Biotecnologia, Brasília-DF; Márcio Alves-Ferreira, Federal University of Rio de Janeiro; André Teixeira Irsigler, Embrapa Genetic Resources and Biotechnology; Georgios Joannis Pappas, Embrapa

Genomics of Compositae Crops: EST Libraries, and Evidence of Hybridization with Wild Relatives
Kay Hodgins, University of British Columbia; Zhao Lai, Department of Biology, Indiana University; Luiz Oliveira, Universidade Federal de Vicosa; David W. Still, Cal Poly Pomona; Michael S. Barker, University of Arizona; Hannes Dempewolf, University of British Columbia; John M Burke, Department of Plant Biology, University of Georgia; Richard Michelmore, Genome Center, University of California; Loren Rieseberg, University of British Columbia

Soybean Ethylene Biosynthesis Genes Potentially Involved in Drought Tolerance
Maria Fatima Grossi de Sa, Embrapa; Fabricio B.M. Arraes, UFRGS; Regina M.S. Amorim, Embrapa Genetic Resources and Biotechnology; Magda A. Beneventi, Embrapa Genetic Resources and Biotechnology; Erika V S Albuquerque, Embrapa; Raquel S. Oliveira, UCB; Alexandre Nepomuceno, Embrapa Soybean; Ricardo Abdelnoor, Embrapa Soybean; Maria E.L. Sa, Embrapa Genetic Resources and Biotechnology

Gene Complements of Lactuca sativa and its Wild Progenitor Lactuca serriola
Alexander Kozik, UC Davis Genome Center; Dean Lavelle, UC Davis Genome Center; Sebastian Reyes-Chin-Wo, UC Davis Genome Center; Lutz Froenicke, Genome Center, University of California; Zhiwen Wang, BGI Shenzhen; Chi Song, BGI Shenzhen; Xun Xu, BGI; Bicheng Yang, BGI Shenzhen; Richard Michelmore, Genome Center, University of California

Sequencing the Genomes of Cultivated Lactuca sativa and its Wild Progenitor, L. serriola
Dean Lavelle, University of California; Sebastian Reyes-Chin-Wo, Authors contributed equally to this work; Zhiwen Wang, BGI Shenzhen; Chi Song, BGI Shenzhen; Alexander Kozik, UC Davis Genome Center; Lutz Froenicke, Genome Center, University of California; Maria Jose Truco, Genome Center, University of California; Christopher Beitel, Genome Center, University of California; Xun Xu, BGI; Bicheng Yang, BGI Shenzhen; Richard Michelmore, Genome Center, University of California

Characterization of PVY (Potato Virus Y) Resistance in Tobacco: Potential Role of an eIF4E Gene Identified by High Throughput Sequencing Technologies
Emilie Julio, Imperial Tobacco Group; Julien Cotucheau, Imperial Tobacco Group; Christophe Decorps, Imperial Tobacco Group; Céline Sentenac, Imperial Tobacco Group; Roxane Volpatti, Imperial Tobacco Group; François Dorlhac de Borne, Imperial Tobacco Group

Structural Variations on Mitochondrial Genome that Specify CMS Cytoplasm in Chili Pepper (Capsicum annuum L.)
Yeong Deuk Jo, Seoul National University; Jongsun Park, Teragen Co.; Jungeun Kim, Korea Research Institute of Bioscience & Biotechnology; Dong-Hwan Kim, University of Texas; Cheol-Goo Hur, Korea Research Institute of Bioscience & Biotechnology; Yong-Hwan Lee, Seoul National University; Byoung-Cheorl Kang, Department of plant science, PGBI of CALS, SNU

De novo Sequencing and Assembly of a Winter Squash (Cucurbita pepo) Fruit Transcriptome
Lindsay E. Wyatt, Cornell University; Michael Mazourek, Cornell University

Gene Expression Profiling of Sweetpotato Storage Roots Through de novo Root Transcriptome and Custom Microarray Analysis
Julio Solis, Louisiana State University Agricultural Center; Nurit Firon, Institute of Plant Sciences; Arthur Villordon, Louisiana State University Agricultural Center; Niranjan Baisakh, Louisiana State University Agricultural Center; Don La Bonte, Louisiana State University Agricultural Center

Technological Resort for the Advancement of Animal Genomic Research “GenHome”
John Williams, Parco Tecnologico Padano; Alessandra Stella, FPTP; Paolo Ajmone Marsan, Inst. of Zootechnics, Università Cattolica del S. Cuore; Giulio Pagnacco, University of Milan; Pasqualino Loi, University of Teramo; Nicolò P. P. Macciotta, University of Sassari; Giulietta Minozzi, Parco Tecnologico Padano; Francesco Strozzi, Parco Tecnologico Padano; Daniela Iamartino, Parco Tecnologico Padano; Stefania Chessa, Institute of Agricultural Biology & Biotechnology - CNR; Bianca Castiglioni, Institute of Agricultural Biology & Biotechnology - CNR

De novo Genome Sequencing of White Clover (Trifolium repens L.)
Andrew G. Griffiths, AgResearch, Grasslands Research Centre; Roger Moraga, AgResearch, Grasslands Research Centre; Anar Khan, AgResearch Ltd. Invermay Agricultural Centre

De novo Genome Sequencing of Salicornia: Generating Model Genomic Resource for Halophytes
Mohammad Suhail Khan, King Abdullah University of Science and Technology; Yung Shwen Ho, King Abdullah University of Science and Technology; Shahjahan Ali, King Abdullah University of Science and Technology; Thomas D. Otto, Wellcome Trust Sanger Institute; Arnab Pain, King Abdullah University of Science and Technology; Nina V. Fedoroff, King Abdullah University of Science and Technology

Differential Expression of Salt Responsive Genes in Saltbush
Monther Sadder, King Saud University; Firoz Anwar, King Saud University; Abdullah A. Al-Doss, King Saud University

Sequencing the Genome of Potentilla micrantha using the PacBio® RS High Resolution Genetic Analyzer Yields High Quality Sequence Contigs and Permits Comparisons with the Genome of the Woodland Strawberry, Fragaria vesca
Dan Sargent, FEM-IASMA; Alessandro Cestaro, FEM-IASMA; Marco Moretto, FEM-IASMA; Marco Ferrarini, FEM-IASMA; Riccardo Velasco, FEM-IASMA; Duccio Cavallieri, FEM-IASMA; Judson A. Ward, Driscoll's Strawberries, Inc.

Current Progress of Genomics for Panax ginseng C.A. Meyer
Tae-Jin Yang, Seoul National University; Sang-Choon Lee, Seoul National University; Jee Young Park, Seoul National University; Hyejoon Joo, Seoul National University; Hong-Il Choi, Seoul National University; Nam-Hoon Kim, Seoul National University; Junki Lee, Seoul National University; Hyun-Seung Park, Seoul National University; Woojong Jang, Seoul National University; HyunJoo Lee, Seoul National University; Nomar Espinosa Waminal, Seoul National University; Murukarthick Jayakodi, Seoul National University; Beomsoon Choi, NICEM, Seoul National University

Genome Sequencing and Analysis in Traditional Chinese Medicine Ganoderma sinense
Yingjie Zhu, Institute of Medicinal Plant Development, CAMS & PUMC; Jiang Xu, Institute of Medicinal Plant Development, CAMS & PUMC; Chao Sun, Institute of Medicinal Plant Development, CAMS & PUMC; Xiang Luo, Institute of Medicinal Plant Development, CAMS & PUMC; Jingyuan Song, Institute of Medicinal Plant Development, CAMS & PUMC; Shilin Chen, Institute of Medicinal Plant Development, CAMS & PUMC

A Transcriptomic Approach to Understanding Isoquinoline Alkaloid Biosynthesis in Narcissus pseudonarcissus
Jane A Pulman, University of Liverpool; Anthony Hall, University of Liverpool; Meriel Jones, University of Liverpool

Sequencing of the Radish Genome
Jeong-Hwan Mun, National Academy of Agricultural Science, RDA; Hee-Ju Yu, The Catholic University of Korea; Namshin Kim, Korean Bioinformation Center, KRIBB; Ki-Byung Lim, Kyungpook National University; Mijin Oh, National Academy of Agricultural Science, RDA; Bumjin Kim, National Academy of Agricultural Science, RDA; Beom-Seok Park, The Agricultural Genome Center, NAAS, RDA; Won-Hyong Chung, Korean Bioinformation Center, KRIBB; Hee Chung, The Catholic University of Korea; Young-Min Jeong, The Catholic University of Korea; Yoon-Jung Hwang, Kyungpook National University

Genomic Analysis of the Upstream Sequences of Limonene Synthase Genes in Sweet Orange
Marco A. Takita, Centro de Citricultura Sylvio Moreira, IAC; Kleber M. Borges, Centro de Citricultura Sylvio Moreira, IAC; Marcos Antonio Machado, Centro de Citricultura Sylvio Moreira, IAC

Phylogenetic Analyses of Citrus LRR-RLKs
Diogo M. Magalhães, Centro de Citricultura Sylvio Moreira, IAC; Valéria Mafra, Centro de Citricultura Sylvio Moreira, IAC; Marco A. Takita, Centro de Citricultura Sylvio Moreira, IAC; Marcos Antonio Machado, Centro de Citricultura Sylvio Moreira, IAC; Alessandra Alves de Souza, Centro de Citricultura Sylvio Moreira, IAC

Draft Genome Sequence of European Pear (Pyrus communis L)
Satoshi Yuhara, Takara Bio Inc.; Katsuhiro Shiratake, Nagoya University; Hitoshi Mori, Nagoya University; Kanji Isuzugawa, Yamagata Integrated Agricultural Research Center; Akira Oikawa, RIKEN PSC; Yoshiyuki Ogata, Osaka Prefecture University; Yoshimasa Tsujimoto, Takara Bio Inc.; Toshiharu Ohba, Takara Bio Inc.; Masanori Takayama, Takara Bio Inc.; Masanari Kitagawa, Takara Bio Inc.

Sequencing, Assembly, and Analysis of the Draft Root Transcriptome of Persea americana: Flooding and Phytophthora cinnamomi
Bianca Jean Reeksting, University of Pretoria; Nanette Coetzer, University of Pretoria; Waheed Mahomed, University of Pretoria; Noelani van den Berg, University of Pretoria

454 Pyrosequencing Based Transcriptome Analysis for Fruit Skin of Mango, Mangifera indica
Naoya Uraski, Okinawa Prefectural Agricultural Research Center; Ayano Shudo, Okinawa Prefectural Agricultural Research Center; Kazuhiko Tarora, Okinawa Prefectural Agricultural Research Center; Satoko Goeku, Okinawa Prefectural Agricultural Research Center; Yuko Makishi, Okinawa Prefectural Agricultural Research Center, Nago; Yoshino Shimabukuro, Okinawa Prefectural Agricultural Research Center, Nago; Osamu Jahana, Okinawa Prefectural Agricultural Research Center, Nago; Satoshi Nakasone, Okinawa Prefectural Agricultural Research Center, Nago; Moriyuki Shoda, Okinawa Prefectural Agricultural Research Center, Nago

DNA Methylation and Gene Expression in Cotton Petals
Joshua A. Udall, Brigham Young University; Justin T. Page, Brigham Young University; Aditi Rambani, Brigham Young University; Kara K. Grupp, Iowa State University; Jonathan F. Wendel, Iowa State University

Genome Resquencing of Select Cotton Diploid Accessions
Justin T. Page, Brigham Young University; Mark D. Huynh, Brigham Young University; Allen Van Deynze, Seed Biotechnology Center, University of California; Joshua A. Udall, Brigham Young University

Ordering Draft Genome Sequence of Flax (Linum usitatissimum)
Frank M. You, Agriculture and Agri-Food Canada; Santosh Kumar, Agriculture and Agri-Food Canada; Mitali Banik, Agriculture and Agri-Food Canada; Raja Ragupathy, Agriculture and Agri-Food Canada; Michael K. Deyholos, University of Alberta; Yong-Bi Fu, Agriculture and Agri-Food Canada; Andrew G. Sharpe, National Research Council; Sylvie Cloutier, Agriculture and Agri-Food Canada

Decoding Flax Genome for Structural Genomics and Functional Insights into Yield Genes
Prasanta K Dash, National Research Centre on Plant Biotechnology; Abdul K Jailani, National Research Centre on Plant Biotechnology; Payal Gupta, National Research Centre on Plant Biotechnology; Raju Datla, National Research Council Canada; Michael K. Deyholos, University of Alberta; Polumetla Ananda Kumar, National Research Centre on Plant Biotechnology

RNA-Seq Analysis and de novo Transcriptome Assembly of Coffea arabica and Coffea eugenioides
Priscila Mary Yuyama, CIRAD; Marcelo Falsarella Carazzolle, Genomics and Expression Laboratory- UNICAMP; Osvaldo Reis Júnior, Universidade Estadual de Campinas; Jaime Hikaru Mishima, Universidade Estadual de Campinas; Suzana Tiemi Ivamoto, Instituto Agronômico do Paraná; Douglas Silva Domingues, Instituto Agronômico do Paraná; Pierre Charmetant, Instituto Agronômico do Paraná; Thierry Leroy, CIRAD; Luiz Filipe Protasio Pereira, Embrapa Café

mRNA-Seq Assisted Discovery of Genetic Programs Involved in Root Meristem Activity and Exhaustion in a Sonoran Desert Cactaceae
Svetlana Shishkova, Instituto de Biotecnología, UNAM; Marta Matvienko, CLC bio; Jesús Montiel, Instituto de Biotecnología, UNAM; Mayra Lopez-Valle, Instituto de Biotecnología, UNAM, Cuernavaca, Mexico; Yamel Ugartechea-Chirino, Instituto de Biotecnología, UNAM, Cuernavaca, Mexico; Selene Napsucialy-Mendivil, Instituto de Biotecnología, UNAM, Cuernavaca, Mexico; Alexander Kozik, Genome Center, University of California - Davis; Joseph G. Dubrovsky, Instituto de Biotecnología, UNAM, Cuernavaca, Mexico

Small RNA Expression Profiles During Determinate Primary Root Growth in Cardon Pachycereus pringlei (Cactaceae)
Svetlana Shishkova, Instituto de Biotecnología, UNAM; Marta Matvienko, CLC bio; Selene Napsucialy-Mendivil, Instituto de Biotecnología, UNAM, Cuernavaca, Mexico; Janet McDowell, Life Technologies; Nancy Fong, Life Technologies; Joseph G. Dubrovsky, Instituto de Biotecnología, UNAM, Cuernavaca, Mexico

Comparative Genomics of Cassava Bacterial Blight Strains
Rebecca Bart, University of California Berkeley

Moniliophthora roreri and Moniliophthora perniciosa: Atypical Hemibiotrophs Causing Disease on Cacao
Bryan Bailey, Sustainable Perennial Crops Lab, USDA-ARS; Mark Guiltinan, The Pennsylvania State University; Jane Crozier, CABI; Wilbert Phillips, Centro Agronomico Tropical de Investigacion; Gonçalo Amarante Guimarães Pereira, Genomics and Expression Laboratory- UNICAMP; Lyndel Meinhardt, Sustainable Perennial Crops Lab, USDA/ARS

The Mitochondrial Genome of Pyrenophora tritici-repentis
Charles F. Crane, USDA-ARS; Viola Manning, Oregon State University; Iovanna Pandelova, Oregon State University; Li-Jun Ma, The Broad Institute; Lynda M. Ciuffetti, Oregon State University; Stephen B. Goodwin, USDA ARS

Next Generation Sequencing of Buchnera aphidicola Genomes from 11 Diuraphis noxia Biotypes
Leon Van Eck, Stellenbosch University; Laura De Jager, Stellenbosch University; N. Francois V. Burger, Stellenbosch University; Anna-Maria Botha, Stellenbosch University

Vertebrate Genome Biology at the Broad Institute
Jeremy Johnson, Broad Institute; Jessica Alfoldi, Broad Institute; Jason Turner-Maier, Broad Institute; Marcia Lara, Broad Institute; Ross Swofford, Broad Institute; Michele Perloski, Broad Institute; Eric Lander, Broad Institute; Federica DiPalma, Broad Institute; Kerstin Lindblad-Toh, Science for Life Laboratory, Uppsala University

Extensive DNA Variant Detection in a Cattle Population by Low-Coverage Re-Sequencing
Bernhard Franz Aigner, Chair of Animal Breeding - Technische Universität München; Sandra Jansen, Chair of Animal Breeding - Technische Universität München; Hubert Pausch, Chair of Animal Breeding - Technische Universität München; Michal Wysocki, Chair of Animal Breeding - Technische Universität München; Sebastian Eck, Institute of Human Genetics - Helmholtz Zentrum München; Anna Benet-Pagès, Institute of Human Genetics - Helmholtz Zentrum München; Thomas Wieland, Institute of Human Genetics - Helmholtz Zentrum München; Elisabeth Graf, Institute of Human Genetics - Helmholtz Zentrum München; Tim Strom, Institute of Human Genetics - Helmholtz Zentrum München; Thomas Meitinger, Institute of Human Genetics - Helmholtz Zentrum München; Ruedi Fries, Chair of Animal Breeding - Technische Universität München

Automatic Workflow to Compare Variants Between Genomes
Cecilie Boysen, CLC bio; Anika Joecker, CLC bio; Marta Matvienko, CLC bio; J.- Uwe Appelt, CLC bio; Liselotte Kahns, CLC bio; Søren Mønsted, CLC bio; Jacob Grydholt, CLC bio; Bjarne Knudsen, CLC bio; Martin Bundgaard, CLC bio; Jonas Buur Sinding, CLC bio; Henrik Handberg, CLC bio; Anne-Mette K. Hein, CLC bio; Mikkel Nygaard Ravn, CLC bio; Andreas Joecker, CLC bio; Morten Værum, CLC bio; Roald Forsberg, CLC bio

Ovine Genomic Sequence and Polymorphisms Present in Leptin and Promoter Region
Rebecca Cockrum, Colorado State University; Robert H. Stobart, University of Wyoming; Scott L. Lake, University of Wyoming; Kristi M. Cammack, Department of Animal Science, University of Wyoming

Sequencing and Assembly of the Asian seabass Transcriptome
Natascha May Thevasagayam, Temasek Life Sciences Laboratory; Sai Rama Sridatta Prakki, Temasek Life Sciences Laboratory; Junhui Jiang, Temasek Life Sciences Laboratory; Jolly M. Saju, Temasek Life Sciences Laboratory; Hsiao Yuen Kwan, Temasek Life Sciences Laboratory; Woei Chang Liew, Temasek Life Sciences Laboratory; Purushothaman Kathiresan, Temasek Life Sciences Laboratory; Jun Hong Xia, Temasek Life Sciences Laboratory; Gen Hua Yue, Temasek Life Sciences Laboratory; Laszlo Orban, Temasek Life Sciences Laboratory

Sequence Genetic Annotation from a cDNA Library of Monterey Sardine Sardinops sagax caeruleus
Rigoberto Delgado Vega, CICESE; Edgar A. Lopez-Landavery, CICESE; Miguel A. del Rio Portilla, CICESE

DNA Polymorphism and Nucleotide Sequence Analysis of Growth Hormone Gene and its Relationship with Body Weight in Meat Type of Chicken
Mohsen Ekhtiari, Veterinary and Animal Science College; C.S Nagaraja, Veterinary and Animal Science College; M.R Jayashankar, Veterinary and Animal Science College; H.N Murthy, Veterinary and Animal Science College

A Multi-Platform Draft de novo Genome Assembly and Comparative Analysis for the Scarlet Macaw (Ara macao)
Christopher M. Seabury, Texas A&M University; Scot E. Dowd, Molecular Research LP; Paul M. Seabury, ElanTech Inc; Terje Raudsepp, Texas A&M University; Donald J. Brightsmith, Texas A&M University; Poul Liboriussen, CLC bio; Yvette A. Halley, Texas A&M University; Colleen A. Fisher, Texas A&M University; Elaine Owens, Texas A&M University; Ganesh Viswanathan, Texas A&M University; Ian R. Tizard, Texas A&M University

The Draft Genome of a C4 Dicot, Amaranthus hypochondriacus
Meeta Sunil, Institute of Bioinformatics and Applied Biotechnology; Arun K. Hariharan, Institute of Bioinformatics and Applied Biotechnology; Soumya Nayak, Institute of Bioinformatics and Applied Biotechnology; Neeraja M. Krishnan, Institute of Bioinformatics and Applied Biotechnology; Jayanth Balakuntla, Institute of Bioinformatics and Applied Biotechnology; Kunal Dhas, Institute of Bioinformatics and Applied Biotechnology; Mohit Verma, Institute of Bioinformatics and Applied Biotechnology; Saurabh Gupta, Institute of Bioinformatics and Applied Biotechnology; Manjari Deshmukh, Institute of Bioinformatics and Applied Biotechnology; Swetansu Pattnaik, Institute of Bioinformatics and Applied Biotechnology; Ravi P. Gupta, Institute of Bioinformatics and Applied Biotechnology; Bibha Choudhary, Institute of Bioinformatics and Applied Biotechnology; Binay Panda, Institute of Bioinformatics and Applied Biotechnology; Subhashini Srinivasan, Institute of Bioinformatics and Applied biotechnology

Efficient de-novo Assembly of a Large Genome for Constructing a Reference Genome of the Pepper (Capsicum annuum L.)
Seungill Kim, Seoul National University; Yong-Min Kim, Seoul National University; Seon-In Yeom, Seoul National University; Doil Choi, Seoul National University

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