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Genome Mapping, Tagging & Characterization: Rice

Date: Monday, January 14, 2013
Time: 7:00 AM-10:00 PM
Room: Grand Exhibit Hall
Rapid Mapping of Quantitative Trait Loci in Rice by Whole Genome Resequencing
Hiroki Takagi, United Graduate School of Agricultural Sciences Iwate; Akira Abe, Iwate Biotechnology Research Center; Muluneh Tamiru Oli, Iwate Biotechnology Research Center; Ryohei Terauchi, Iwate Biotechnology Research Center

Pipeline for Detection of Mutations from Whole-Genome Sequence Data of Rice
Akio Miyao, National Institute of Agrobiological Sciences; Mariko Nakagome, National Institute of Agrobiological Sciences; Elena Solovieva, National Institute of Agrobiological Sciences; Yuichi Katayose, National Institute of Agrobiological Sciences; Yoshiaki Nagamura, National Institute of Agrobiological Sciences; Takeshi Itoh, National Institute of Agrobiological Sciences; Akira Takahashi, National Institute of Agrobiological Sciences; Hirohiko Hirochika, National Institute of Agrobiological Sciences

High-Throughput SNP Genotyping for Breeding Applications in Rice
Michael J. Thomson, International Rice Research Institute; Christine J. Dilla-Ermita, International Rice Research Institute; Ma. Ymber Reveche, International Rice Research Institute; Joong Hyoun Chin, The International Rice Research Institute; Sang Ho Chu, The International Rice Research Institute; Ramil P. Mauleon, International Rice Research Institute; Edilberto Redona, The International Rice Research Institute; Endang M. Septiningsih, The International Rice Research Institute; Bertrand Collard, The International Rice Research Institute; Casiana Vera Cruz, The International Rice Research Institute; Kenneth L. McNally, International Rice Research Institute; Hei Leung, International Rice Research Institute; Eero Nissila, International Rice Research Institute

Resequencing Japonica rice 9522 variety, Oryza sativa, using Ion PGMTM Sequencer
Li Yu, l; Cheng Wang, Life Technologies; Guodong Zhao, Life Technologies; Zhao Xu, Life Technologies; Jie Zong, Shanghai Jiao Tong University; Jenny Xiao, Life Technologies; Alexander Sartori, Life Technologies

Parallel Genomic Selection with the Island Model: A Simulation Study in Rice
Shiori Yabe, The University of Tokyo; Masanori Yamasaki, Kobe University; Kaworu Ebana, National Institute of Agrobiological Sciences; Hiroyoshi Iwata, The University of Tokyo

Using Extremely High-Density Genetic Maps for Efficient QTL Detection in Breeding Populations
Noam Chehanovsky, NRGENE Ltd.; Omer Barad, NRGENE Ltd.; Kobi Baruch, NRGENE LTD.; Adi Fledel-Alon, NRGENE Ltd.; Doron Shem-Tov, NRGENE Ltd.; Oori Weisshaus, NRGENE Ltd.; Doron Cohen, NRGENE Ltd.; Ayala Shemer, NRGENE Ltd.; Guy Kol, NRGENE Ltd.; Nissim Yonash, NRGENE; Gil Ronen, NRGENE Ltd.

Vietnamese Rice Varieties Resequenced
Sarah Ayling, The Genome Analysis Centre; Christian Rogers, John Innes Centre; Khuat Huu Trung, Institute of Agricultural Genetics; Le Huy Ham, Institute of Agricultural Genetics; Giles Oldroyd, John Innes Centre; Mario Caccamo, The Genome Analysis Centre

Developing Rice Mapping Populations as a Genetic Resource for Validation of GWAS
Georgia C. Eizenga, USDA-ARS Dale Bumpers National Rice Research Center; M Liakat Ali, U Nebraska, West Central Research & Extension Center; Susan McCouch, Cornell University

Validation of SNP Markers Selected by Whole Genome Sequencing for Rice Disease Resistance
Yamid Sanabria, Louisiana State University Agricultural Center; James Oard, Louisiana State University Agricultural Center

Hidden QTLs Revealed by Heterozygous de novo Assembly
Omer Barad, NRGENE Ltd.; Kobi Baruch, NRGENE LTD.; Guy Kol, NRGENE Ltd.

Development of Inter-Specific Chromosome Segment Substitution Libraries (CSSL) in Rice
Namrata Singh, Cornell University; Hyun Jung Kim, Cornell University; M Liakat Ali, U Nebraska, West Central Research & Extension Center; Kazi M. Akther, Cornell University; Sang-Nag Ahn, Chungnam National Univ; Georgia C. Eizenga, USDA-ARS Dale Bumpers National Rice Research Center; Susan McCouch, Cornell University

Quantification of Causal Relationships Between Heading Date and other Traits Using Structural Equation Modeling: Application to Bi-Parental and Association Mapping Populations in Rice
Akio Onogi, The University of Tokyo; Kiyosumi Hori, National Institute of Agrobiological Sciences; Osamu Ideta, National Agriculture and Food Research Organization; Kaworu Ebana, National Institute of Agrobiological Sciences; Takuma Yoshioka, Kobe University; Masanori Yamasaki, Kobe University; Hiroyoshi Iwata, The University of Tokyo

Sdr7, A Quantitative Trait Locus for Seed Dormancy in Rice, Encodes an Ortholog of the Arabidopsis Protein Delay of Germination 1
Tomoki Hoshino, National Institute of Agrobiological Science; Salem Marzougui, National Institute of Agrobiological Science; Yoshinobu Takeuchi, National Institute of Crop Science; Masahiro Yano, National Institute of Agrobiological Sciences; Kazuhiko Sugimoto, National Institute of Agrobiological Science

Genetic Variability in a Rice Breeding Population for Cold Tolerance In Southern Brazil
Renata Juliana Ahlert, University of Georgia; Bianca Silva Fernandes, Federal University of Pelotas; Fabiane Igansi de Castro dos Santos, Federal University of Pelotas; Raissa Martins da Silva, Federal University of Pelotas; Helaine Claire Ferreira de Almeida, Federal University of Pelotas; Daniela A. Lino Lourenço, University of Georgia; Ederson Lopes Souza, Federal University of Pelotas; Luciano C. da Maia, Federal University of Pelotas; Ariano Martins de Magalhães Jr., Embrapa Temperate Climate; Scott Jackson, University of Georgia; Antonio Costa De Oliveira, Federal University of Pelotas

Transcriptome Reprogramming During the Early Response to Magnaporthe oryzae in Durable Resistant vs Susceptible Rice Genotypes
Paolo Bagnaresi, CRA-GPG, Genomics Research Centre; Chiara Biselli, CRA-Rice research unit; Luigi Orrù, CRA-GPG, Genomics Research Centre; Simona Urso, CRA-GPG, Genomics Research Centre; Laura Crispino, FPTP, Parco Tecnologico Padano; Pamela Abbruscato, FPTP, Parco Tecnologico Padano; Pietro Piffanelli, FPTP, Parco Tecnologico Padano; Elisabetta Lupotto, CRA-DPV, Vegetal Biology and Production Department; Luigi Cattivelli, CRA-GPG, Genomics Research Centre; Giampiero Valè, CRA-Rice research unit

Detection and Positional Cloning of a Rice Seed-Length QTL Between ‘Koshihikari' and ‘Nipponbare' (temperate japonica) Using SmartGrain, New High-Throughput Measurement Software
Taeko Shibaya, National Institute of Agrobiological Sciences; Takanari Tanabata, National Institute of Agrobiological Sciences; Kiyosumi Hori, National Institute of Agrobiological Sciences; Masahiro Yano, National Institute of Agrobiological Sciences

Tiller Formation in Rice is Altered by Overexpression of OsIAGLU Gene Encoding an IAA-conjugating Enzyme or Exogenous Treatment of Free IAA
Hee-Jong Koh, Seoul National University; Min-Seon Choi, Kyung Hee University; Eunbyeol Koh, Seoul National University; Mi-Ok Woo, USDA; Rihua Piao, Seoul National University

Genetic Analysis of the Sheathed Panicle Trait in Rice
Backki Kim, Seoul National University; Joohyun Lee, Konkuk University; Eunbyeol Koh, Seoul National University; Hee-Jong Koh, Seoul National University

Characterizations and Fine Mapping of a Dwarf Gene d13 in Rice
Akter MD Babul, Seoul National University; Rihua Piao, Seoul National University; Backki Kim, Seoul National University; Yunjoo Lee, Seoul National University; Eunbyeol Koh, Seoul National University; Hee-Jong Koh, Seoul National University

Studies on Water-Saving and Drought-Resistance Rice (WDR)
Lijun Luo, Shanghai Agro-biological Gene Center; Hanwei Mei, Shanghai Agrobiological Gene Center

High-Throughput Sequencing of Small RNAs and Comparative Analysis Between Two Rice Cultivars Different of Cool Temperature Stress Tolerance
Shunsuke Maeda, Tohoku University; Satomi Sakazono, Tohoku University; Kentaro Yano, School of Agri., Meiji University; Kaori Yamamura, Tohoku University; Hiromi Masuko-Suzuki, Tohoku University; Tomoaki Fujioka, Mie University; Kuniaki Nagano, Miyagi Prefectural Hokubu Regional Promotion Office; Takashi Endo, Furukawa Agricultural Experiment Station; Kenichi Saeki, Furukawa Agricultural Experiment Station; Amane Makino, Tohoku University; Ryohei Terauchi, Iwate Biotechnology Research Center; Go Suzuki, Osaka Kyoiku University; Keita Suwabe, Mie University; Masao Watanabe, Tohoku University

Progress on C4 Rice Project -- Vein Spacing and Beyond
Yue-ie Hsing, Institute of Plant and Microbial Biology, Academia Sinica

Isolation and Characterization of a Plastid Terminal Oxidase (PTOX) Gene from Rice (Oryza sativa L.)
Muluneh Tamiru Oli, Iwate Biotechnology Research Center; Akira Abe, Iwate Biotechnology Research Center; Hiroe Utsushi, Iwate Biotechnology Research Center; Kakoto Yoshida, Iwate Biotechnology Research Center; Hiroki Takagi, Iwate Biotechnology Research Center; Koki Fujisaki, Iwate Biotechnology Research Center; Matthew J. Terry, Iwate Biotechnology Research Center; Ryohei Terauchi, Iwate Biotechnology Research Center

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