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Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related

Date: Monday, January 14, 2013
Time: 7:00 AM-10:00 PM
Room: Grand Exhibit Hall
Seeds of Discovery: Next Generation Applications to Explore Maize Genetic Diversity
Sarah Hearne, CIMMYT - International Maize and Wheat Improvement Centre; Juan Burgueño, CIMMYT - International Maize and Wheat Improvement Centre; J. Andrés Christen, CIMAT; Gilberto Esquivel, INIFAP; Jorge Franco, Universidad de la Republica; Juan Manuel Hernández Casillas, INIFAP; Andrzej Kilian, Diversity Arrays Technology Pty Ltd (DArT PL); Ky L. Mathews, CIMMYT - International Maize and Wheat Improvement Centre; Peter Wenzl, CIMMYT - International Maize and Wheat Improvement Centre; Martha C. Willcox, CIMMYT - International Maize and Wheat Improvement Centre

New Reverse Genetics Resources for Maize: Facile Production and Efficient Indexing using Next-Generation Sequencing Technology
Yubin Li, Waksman Institute, Rutgers University; Gregorio Segal, Waksman Institute, Rutgers University; Qinghua Wang, Waksman Institute, Rutgers University; Limei He, Waksman Institute, Rutgers University; Jun T Huang, Waksman Institute, Rutgers University; Wenwei Xiong, Montclair State University; Chunguang Du, Montclair State University; Hugo Dooner, Waksman Institute, Rutgers University

Allele Alliance: An Accurate Detection of Allelic Diversity within Breeding Populations
Nissim Yonash, NRGENE; Adi Fledel-Alon, NRGENE Ltd.; Kobi Baruch, NRGENE LTD.; Omer Barad, NRGENE Ltd.; Doron Shem-Tov, NRGENE Ltd.; Noam Chehanovsky, NRGENE Ltd.; Oori Weisshaus, NRGENE Ltd.; Doron Cohen, NRGENE Ltd.; Ayala Shemer, NRGENE Ltd.; Guy Kol, NRGENE Ltd.; Gil Ronen, NRGENE Ltd.

Large Effect QTL for the Timing of Vegetative Phase Change Detected in a Maize Nested Association Mapping Population and Wisconsin Diversity Panel
Jillian M Foerster, University of Wisconsin-Madison; Candice N. Hirsch, Michigan State University; Eric Riedeman, Dupont Pioneer; Timothy M Beissinger, University of Wisconsin-Madison; German Muttoni, University of Wisconsin-Madison; James M Johnson, University of Wisconsin-Madison; Rajandeep S Sekhon, DOE GLBRC; William Tracy, University of Wisconsin-Madison; Heidi F. Kaeppler, University of Wisconsin; C. Robin Buell, Michigan State University; Natalia de Leon, University of Wisconsin-Madison; Shawn Kaeppler, University of Wisconsin-Madison

Digital Phenotyping Allows for Detailed Growth Curve Modeling in Various Crops
Shital Dixit, KeyGene; Jose Guerra, KeyGene; Gert-Jan Speckmann, KeyGene; Koen Huvenaars, KeyGene; Marco van Schriek, KeyGene

Extensive Genetic Diversity and Low Linkage Disequilibrium within the COMT Locus in Germplasm Enhancement of Maize Populations
Yongsheng Chen, Iowa State University; Michael Blanco, USDA-ARS and Iowa State University, Ames, IA; Qing Ji, Iowa State University; Ursula Karoline Frei, Iowa State University; Thomas Lubberstedt, Iowa State University

From Many, One: Genetic Control of Prolificacy during Maize Domestication
David M. Wills, University of Wisconsin - Madison; Clinton J. Whipple, Brigham Young University; Shohie Takuno, University of California, Davis; Lisa E. Kursel, University of Wisconsin-Madison; Laura M. Shannon, University of Wisconsin; Jeffrey Ross-Ibarra, University of California; John F. Doebley, University of Wisconsin-Madison

Genetic and Epigenetic Control of DNA Methylation Variation in Maize
Steven R. Eichten, University of Minnesota; Jawon Song, Texas Advances Computing Ctr, University of Texas; Matt Vaughn, Texas Advances Computing Ctr, University of Texas; Roman Briskine, University of Minnesota; Chad Myers, University of Minnesota; Cheng-Ting Yeh, Iowa State University; Patrick S. Schnable, Iowa State University; Nathan M. Springer, University of Minnesota,

Genetic Regulation of Grain Protein in Maize Following Long-term Selection
Christine J. Lucas, University of Illinois Urbana-Champaign

Transcriptional and Epigenetic Control of Storage-Protein Gene Expression in Maize Endosperm
Yongrui Wu, Rutgers Universtity; Joachim Messing, Rutgers University

Unraveling Iron Homeostasis of Maize Using Quantitative Genetic and Transcriptomic Approaches
Andreas Benke, Max Planck Institute for Plant Breeding Research; Claude Urbany, Max Planck Institute for Plant Breeding Research; Bruno Huettel, Max Planck Genome Centre; Benjamin Stich, Max Planck Institute for Plant Breeding Research

Phenotypic and Genetic Dissection of Maize Internode Length
German Muttoni, University of Wisconsin-Madison; Jillian M Foerster, University of Wisconsin-Madison; James M Johnson, University of Wisconsin-Madison; Nicholas J Haase, University of Wisconsin-Madison; Timothy M Beissinger, University of Wisconsin-Madison; Scott C Stelpflug, University of Wisconsin-Madison; Candice N Hirsch, Michigan State University; Rajandeep S Sekhon, DOE GLBRC; C. Robin Buell, Michigan State University; Shawn Kaeppler, University of Wisconsin-Madison; Natalia de Leon, University of Wisconsin-Madison

Identification of Genetic Relationship of Maize Germplasms with SSR Markers and Evaluation of Salt Tolerance in Maize
Baohua Wang, School of Life Sciences, Nantong University; Yan Feng, School of Life Sciences, Nantong University; Peng Jiang, School of Life Sciences, Nantong University; Yafeng Wang, School of Life Sciences, Nantong University; Jinbei Li, School of Life Sciences, Nantong University; Xueling Wu, School of Life Sciences, Nantong University; Ping Li, School of Life Sciences, Nantong University

A Rare Gene Copy-Number Variant that Contributes to Maize Aluminum Tolerance and Adaptation to Acid Soils
Lyza Maron, USDA-ARS & Boyce Thompson Institute; Claudia T. Guimaraes, Embrapa Maize and Sorghum; Leon Kochian, Robert W. Holley Center, USDA-ARS & Cornell University

ZmNrat1 is a Novel Candidate Gene Differentially Induced by Al in Maize Contrasting Lines for Al Tolerance
Claudia T. Guimaraes, Embrapa Maize and Sorghum; Renato C. C. Vasconcellos, Federal University of Minas Gerais; Carlos F. S. Tinoco, UNIFEMM – Centro Universitário de Sete Lagoas, MG; Ubiraci G.P Lana, Embrapa Maize and Sorghum; Jurandir V. Magalhaes, Embrapa Maize and Sorghum

Fine-Mapping and Candidate Gene Analysis for qNLB1.02, a Locus Conditioning Quantitative Resistance to Multiple Diseases in Maize
Tiffany M. Jamann, Cornell University; Laura Morales, Cornell University; Judith M. Kolkman, Cornell University; Rebecca J. Nelson, Cornell University

Identification of Molecular Markers Associated to Puccinia melanocephala
Fernanda Raquel Camilo Dos Santos, IAC - Instituto Agronômico; Luciana R. Pinto, Centro de Cana, Instituto Agronômico; Luciana Aparecida Carlini-Garcia, Pólo Centro Sul - APTA; Jorge A. Da Silva, Texas A&M AgriLife Research; Maria Imaculada Zucchi, APTA Regional Pólo Centro-Sul

Wiki: “Field Guide to Maize Mutant Phenotypes”
Gerald Neuffer, University of Missouri; Christopher Bottoms, University of Missouri

Lesion Target Spots: a Model for Cell Death Signaling
Gerald Neuffer, University of Missouri; Toni Kazic, University of Missouri; Gurmukh S Johal, Purdue University

Transformation of Brachypodium distachyon to Analyze CNS Enhancer Activity and Genome Fractionation in Maize
Hugh Young, USDA-ARS-WRRC; James C. Schnable, University of California-Berkeley; Michael Freeling, University of California-Berkeley; John Vogel, USDA-ARS, WRRCenter

A High Resolution Genome-Wide Map of Recombination Rates and Hotspots in Sorghum
Punna Ramu, ICRISAT; Santosh Deshpande, ICRISAT; Charles Thomas Hash, ICRISAT; Trushar Shah, ICRISAT; Hari D. Upadhyaya, ICRISAT; Geoffrey Morris, University of South Carolina; Stephen Kresovich, University of South Carolina; Charlotte Acharya, Cornell University; Sharon E. Mitchell, Cornell University; James V. Harriman, Cornell University; Jeff Glaubitz, Cornell University; Edward S. Buckler, USDA-ARS-Cornell University

Quantitative Trait Loci Mapping for Sugar-Related Traits in Sweet Sorghum based on High-Density SNP Markers
Guilherme S. Pereira, University of São Paulo; Vander Fillipe Souza, Federal University of São João Del-Rei; Rafael Augusto C. Parrella, Embrapa Maize and Sorghum; Cynthia Maria B. Damasceno, Embrapa Maize and Sorghum; Maria Lucia F. Simeone, Embrapa Maize and Sorghum; Robert E. Schaffert, Embrapa Maize and Sorghum; Serge Braconnier, CIRAD; Antonio Augusto F. Garcia, University of São Paulo; Jurandir V. Magalhaes, Embrapa Maize and Sorghum

An Overview of Gibberellin Biosynthetic Genes, Their Related Mutants and the Specific Phenotype in Sorghum
Reynante L Ordonio, Nagoya Univ.; Yusuke Ito, Nagoya Univ.; Asako Hatakeyama, Nagoya Univ.; Kozue Shinohara-Ohmae, Nagoya Univ.; Xian-Jun Song, Nagoya Univ.; Shigemitsu Kasuga, Shinshu Univ.; Jyunichi Yonemaru, Natl. Inst. of Agrobiol. Sci.; Tsuyoshi Tokunaga, Earth Note Co. Ltd.; Hidemi Kitano, Nagoya Univ.; Makoto Matsuoka, Nagoya Univ.; Takashi Sazuka, Nagoya Univ. JST, CREST

Genotype by Environment Interaction of Sorghum Flowering Time
Xin Li, Kansas State University; Tesfaye Tesso, Kansas State University; Jianming Yu, Kansas State University

The Impact of LTR-Retrotransposon Accumulation on Genome Size in Sorghum bicolor (BTx623) and its Perennial Relative S. propinquum
Dhanushya Ramachandran, West Virginia University; Jennifer S. Hawkins, West Virginia University

Unravelling Polyploidy: NGS Approaches to Sugarcane Genomics
Paul J. Berkman, CSIRO Plant Industry; Peter C. Bundock, Southern Cross University; Jiri Stiller, CSIRO Plant Industry; Anne L. Rae, CSIRO Plant Industry; Rosanne E. Casu, CSIRO Plant Industry; Robert Henry, University of Queensland; Karen S. Aitken, CSIRO Plant Industry

Biocuration Improves Annotation of Protein-Coding Genes in the Sugarcane Genome
Alessandro de Mello Varani, University of São Paulo; Nathalia de Setta, GaTE Lab - University of São Paulo; Guilherme M. Q. Cruz, GaTE Lab - University of São Paulo; Edgar A. O. Cruz, GaTE Lab - University of São Paulo; Cushla J. Metcalfe, GaTE Lab - University of São Paulo; Jonas W. Gaiarsa, GaTE Lab - University of São Paulo; Alessandra Palhares, University of São Paulo; Maria Lucia Carneiro Vieira, University of São Paulo; João Paulo Kitajima, Mendelics Análise Genômica; Marie-Anne Van Sluys, GaTE Lab - Botanica - Universidade de São Paulo; Claudia B. Monteiro-Vitorello, ESALQ - University of São Paulo

Endophytic Nitrogen Fixing Bacteria from Sugarcane (Sacharum spp.) Genotypes Cultivated in India
Elham Jafarzadeh, Vasantdada Sugar Institute Pune; T.Y. Yeole, Agharkar Research Institute (ARI); Rutuja More, Vasantdada Sugar Institute; Dhara Sachdev, University of Pune; Ganesh Kalbhor, Vasantdada Sugar Institute

Genetic Variability Among the Chloroplast Genomes of Sugarcane (Saccharum spp.) and its Wild Progenitor Species S. spontaneum L
Yong-Bao Pan, USDA-ARS, MSA, SRU, Houma, LA 70360, USA; Hui Zhou, Sugarcane Research Institute; Jianrong Zhu, Sugarcane Research Institute; Xin Lu, Sugarcane Research Institute

Experimental Validation of Genomic Selection in Sugarcane
Matthieu Gouy, eRcane, Cirad, Université de la Réunion (UMR PVBMT); Yves Rousselle, Cirad (UMR PVBMT); Jean-Yves Hoarau, CIRAD, (UMR AGAP); Laurent Costet, CIRAD (UMR PVBMT); Samuel Nibouche, CIRAD (UMR PVBMT)

Long-Term Genome Hybridization in Sugarcane Reveals Decoupled Genetic and Epigenetic Effects
Clicia Grativol, Federal University of Rio de Janeiro; Michael Regulski, Cold Spring Harbor Laboratory; Milos Tanurdzic, University of Queensland; Rodrigo Latado, Centro APTA Citros Sylvio Moreira/IAC; Renato Vicentini, University of Campinas; Laurent Farinelli, Fasteris SA; Rob Martienssen, HHMI-GBMF Cold Spring Harbor Laboratory; Adriana Silva Hemerly, IBqM/Universidade Federal do Rio de Janeiro; Paulo Ferreira, IBqM/Universidade Federal do Rio de Janeiro

Broad-Sense Heritability and QTL Mapping for Brown Rust and Pith in Sugarcane (Saccharum spp.) Commercial Cross
Thiago W. A. Balsalobre, University of Campinas; Guilherme S. Pereira, University of São Paulo; Fernanda Z. Barreto, Federal University of São Carlos; Renato R. Silva, University of São Paulo; Luiz P. Zavaglia, Federal University of São Carlos; Sandro A. Ferrarez, Federal University of São Carlos; Hermann P. Hoffmann, Federal University of São Carlos; Antonio Augusto F. Garcia, University of São Paulo; Anete P. Souza, Laboratory of Genetics and Molecular Analysis, UNICAMP; Monalisa S. Carneiro, Federal University of São Carlos

Identification and Characterization of Transcripts Associated with Tolerance to Drought and Flooding Stress in Sugarcane
John J. Riascos, Colombian Sugarcane Research Center (Cenicaña); Hector F. Espitia, Colombian Sugarcane Research Center (Cenicaña); Jershon Lopez-Gerena, Colombian Sugarcane Research Center (Cenicaña); Jorge Ignacio Victoria, Colombian Sugarcane Research Center (Cenicaña)

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