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Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Cellular Processes and Regulatory Networks

Date: Monday, January 14, 2013
Time: 7:00 AM-10:00 PM
Room: Grand Exhibit Hall
A miR7122-Triggered phasiRNA Pathway with a Complex Evolutionary History in Plants
Rui Xia, Virginia Tech; Eric Beers, Virginia Tech; Blake C. Meyers, University of Delaware; Zongrang Liu, USDA-ARS-AFRS

Transcriptomic Analysis of the Observed Phytonutrient Composition Differences in Plants Grown Under Organic vs. Conventional Soil Management
Amit Dhingra, Department of Horticulture, Washington State University; Richard Sharpe, Molecular Plant Sciences Graduate Program,; Luke Gustafson, Washington State University; Artemus Harper, Department of Horticulture, Washington State University; Derick Jiwan, Washington State University; Preston Andrews, Washington State University

Epigenomic Profiling to Gain Insight in Heterosis in Rice
Henriette O'Geen, UC Davis Genome Center; Isabelle Henry, UC Davis; Ryan W. Kim, UC Davis Genome Center; Luca Comai, Plant Biology and Genome Center, UC Davis

Rice Genomics Tools Reveal a WRKY53 Transcriptional Network in Wheat
Leon Van Eck, Colorado State University; Rebecca M. Davidson, Michigan State University; Shuchi Wu, Virginia Tech; Bingyu Zhao, Virginia Tech; Jan E. Leach, Colorado State University; Nora Lapitan, Colorado State University

A High Resolution Structural and Proteomic Atlas of the Developing Rice Leaf
Mingshu Huang, Cornell University; Giulia Friso, Cornell University; Yukari Asakura, Nihon University; Robert Turgeon, Cornell University; Lalit Ponnala, Cornell University; Qi Sun, Cornell University; Klaas van Wijk, Cornell University

Comparative Transcriptomics Involving Greenbug and Water-Deficit Stress Responses in Hard-Red Winter Wheat
Srirama Krishnareddy, Texas A&M University; Shuyu Liu, Texas A&M University; Alina Akhunova, Kansas State University; James Mahan, USDA-ARS; Yiqun Weng, USDA ARS/ Universtiy of Wisconsin; Qingwu Xue, Texas AgriLife Research; Jakie C Rudd, Texas A&M University; Paxton Payton, USDA-ARS

Analysis of Sucrose to Starch Metabolism Pathway in Developing Grains of Common Wheat
Shalini Mukherjee, University of Manitoba; Konstantin Kulichikhin, University of Manitoba; Anita Brule-Babel, University of Manitoba; Claudio Stasolla, University of Manitoba; Belay T. Ayele, University of Manitoba

A MITE Inserted into the Promoter of the Dominant Vrn-A1 Gene in Spring Wheat Contains miR1123
Ming Yu, Oklahoma State University; Brett Carver, Oklahoma State University; Liuling Yan, Oklahoma State University

Fusarium Fungal Toxin Screens Against Yeast Genome Deletion Collections to Define Novel Resistance Mechanisms
Steve Gleddie, Agriculture and AgriFood Canada; Linda Harris, Agriculture and AgriFood Canada; Anne Hermans, Agriculture and AgriFood Canada; Kristin Baetz, University of Ottawa; Leslie Mitchell, University of Ottawa

Homo-dimerization and Ligand Binding by the Leucine-rich Repeat Domain at RHG1/RFS2 underlying Resistance to Two Soybean Pathogens
Ahmed Jawaad Afzal, OSU; Ali Srour, Southern Illinois University Carbondale; Ayan Malakar, SIUC; Navneet Dogra, SIUC Dept of Chemistry; Punit Koli, SIUC Dept of Chemistry; David A. Lightfoot, Southern Illinois University

Genetic Network Regulating the Early Symbiotic Responses in Legumes
Jhuma Datta, CSJM University, Kanpur, India; Estibaliz Larrainzar, University of California-Davis, Davis, CA; Jeong-Hwan Mun, National Academy of Agricultural Science, RDA; Douglas R Cook, University of California-Davis, Davis, CA; Brendan K. Riely, University of California-Davis, Davis, CA

Genomic Approaches to Photoperiodic Flowering Response in Soybean
Yoshie Hanzawa, University of Illinois at Urbana-Champaign

The Transition of From Endogenous Primary to Secondary siRNAs that Silence Soybean Chalcone Synthase is Revealed by Small RNA-Seq of Developing Seed Coats
Young B Cho, University of Illinois; Sarah I. Jones, University of Illinois; Lila Vodkin, University of Illinois

Transcriptome Sequencing To Identify Novel Transcription Factors Involved In Condensed Tannin Production In Clover
Kerry Hancock, AgResearch, Grasslands Research Centre; Roger Moraga, AgResearch, Grasslands Research Centre; Nick Albert, AgResearch, Grasslands Research Centre; Vern Collette, AgResearch, Grasslands Research Centre

Exploring Genetic Diversity in Tomato Fruit with a System Biology Approach
Laura Pascual, INRA GAFL; Jiaxin Xu, INRA GAFL; Nelly Desplat, INRA GAFL; Benoît Valot, INRA Plataforme d'analyse Protéomique de Paris Sud-Ouest; Mireille Faurobert, INRA GAFL; Dominique Brunel, INRA-EPGV; Mathilde Causse, INRA GAFL

Identification of Gene and Metabolite Regulatory Networks During Early Fruit Development in Tomato (Solanum lycopersicum): the Effect of SUN on Early Fruit Development
Josh Clevenger, The Ohio State University; Gustavo Rodriguez, Facultad de Ciencias Agrarias; Jason van Houten, The Ohio State University - OARDC; Esther van der Knaap, The Ohio State University - OARDC

Apple (Malus x domestica Borkh.) Responds to a Simulated Severe Drought: Genes Common and Unique to Leaves and Bark
Carole Bassett, USDA, ARS; Jacob T. Moore, Pennsylvania State University; Ryan M. Jenkins, Pennsylvania State University; Robert E. Farrell, Pennsylvania State University

Genomic and Biochemical Analyses of Anthocyanin Production in Apple
Steve van Nocker, Michigan State University; Sean Angus Rogers, Michigan State University

Establishing a Physiogenomics-Based Understanding of Cold-Induced System 2 Ethylene in Pear
Christopher Hendrickson, Washington State University; Amit Dhingra, Department of Horticulture, Washington State University; Herman Silva, Lab Gen Func & Bioinfo - Fac Ciencias Agro - U de Chile; Todd Einhorn, Horticulture, Oregon State University ; David Sugar, Horticulture, Oregon State University; Charles Eric Durel, INRA, Institut de Recherche en Horticulture et Semences ; Yves Chevreau, INRA Site d'Angers Beaucouzé; Yves Lespinasse, INRA - C.R. d'Angers; Riccardo Velasco, FEM-IASMA

A Genomic Approach to Understanding Fruit-Pedicel Abscission in Sweet Cherry
Benjamin Kilian, Washington State University; Tyson Koepke, Washington State University; Artemus Harper, Department of Horticulture, Washington State University; Scott Schaeffer, Department of Horticulture, Washington State University; Vandhana Krishnan, University of Idaho; Matthew Whiting, Washington State University; Nnadozie Oraguzie, Washington State University; Amit Dhingra, Department of Horticulture, Washington State University

Coffee Transcriptome Analysis using RNA Sequencing: Comparison of Coffees Grown at Different Altitudes
Juan F. Medrano, University of California-Davis; Ricardo Koyner, Kotowa Farms; Alma Islas-Trejo, University of California-Davis; Gonzalo Rincon, University of California-Davis

Genome-Wide and Specific Effects of cis and trans Regulation on Phenotypic Diversity in Arabidopsis Allopolyploids and Their Progenitors
Danny W-K Ng, Hong Kong Baptist University; Xiaoli Shi, University of Texas at Austin; Changqing Zhang, University of Texas at Austin; Z. Jeffrey Chen, The University of Texas at Austin

A High-Resolution Map of Regulatory DNA in Arabidopsis thaliana
Alessandra M. Sullivan, University of Washington, Genome Sciences; Andrej A. Arsovski, University of Washington, Biology; Janne Lempe, MPI for Plant Breeding Research, Cologne; Kerry L. Bubb, University of Washington, Genome Sciences; Pete J. Sabo, University of Washington, Genome Sciences; Richard Sandstrom, University of Washington, Genome Sciences; Robert E. Thurman, University of Washington, Genome Sciences; Shane Neph, University of Washington, Genome Sciences; Alex P. Reynolds, University of Washington, Genome Sciences; Audra K. Johnson, University of Washington, Genome Sciences; Eric Haugen, University of Washington, Genome Sciences; Benjamin Vernot, University of Washington, Genome Sciences; Agnieszka Dargiel, University of Washington, Genome Sciences; Jun Neri, University of Washington, Genome Sciences; Molly Weaver, University of Washington, Genome Sciences; Morgan Diegel, University of Washington, Genome Sciences; Jennifer L. Nemhauser, University of Washington, Biology; Christine Queitsch, University of Washington, Genome Sciences; John A. Stamatoyannopoulos, University of Washington, Genome Sciences

A Tri-Antagonistic bHLH System Regulates Cell Elongation in Arabidopsis
Miho Ikeda, Natl Inst of Advanced Industrial Science and Technology; Sumire Fujiwara, Natl Inst of Advanced Industrial Science and Technology; Nobutaka Mitsuda, Natl Inst of Advanced Industrial Science and Technology; Masaru Ohme-takagi, IEST, Saitama University

Vine Physiology and Metabolite Profiling Provide a Link Between Hydraulic Behavior and Drought Tolerance
Uri Hochberg, Ben Gurion University; Asfaw Degu, Ben Gurion University; David Toubiana, Ben Gurion University; Tanya Gendler, Ben Gurion University; Zoran Nikoloski, University of Potsdam and MPI-MP; Shimon Rachmilevitch, Ben Gurion University; Aaron Fait, Ben Gurion University

The microEGo Project: Unraveling Post-Transcriptional Regulation Mechanisms on Eucalyptus Wood Formation
Victor Carocha, ITQB - Instituto de Tecnologia Química e Biológica; Clara S. Graça, Instituto de Biologia Experimental e Tecnologica; Nuno D. Mendes, Instituto de Engenharia de Sistemas e Computadores; Jorge Oliveira, Instituto de Biologia Experimental e Tecnológica; Andreia J Amaral, Instituto de Medicina Molecular; Lucinda Neves, Instituto de Biologia Experimental e Tecnológica; Clara Araújo, Altri Florestal; Susana Araújo, Instituto de Biologia Experimental e Tecnológica; Susana Pera, Instituto de Investigação Científica Tropical; Pedro M. Fevereiro, Instituto de Biologia Experimental e Tecnologica; Jacqueline Grima-pettenati, University of Toulouse III - CNRS; Ana Teresa Freitas, Instituto de Engenharia de Sistemas e Computadores; Jorge A P Paiva, Instituto de Biologia Experimental e Tecnologica

Floral Transcriptome of Eucalyptus grandis
Amy Leigh Klocko, Oregon State University; Kelly Vining, Oregon State University; Vindya Amarasinghe, Dept. of Botany & Plant Pathology, Oregon State University; Elisson Romanel, Federal University of Rio de Janeiro; Márcio Alves-Ferreira, Federal University of Rio de Janeiro; Palitha Dharmawardhana, Oregon State University; Sushma Naithani, Oregon State University; Chris Sullivan, Oregon State University; Rebecca Jones, University of Tasmania; Pankaj Jaiswal, Dept. of Botany & Plant Pathology, Oregon State University; Martin Ranik, University of Pretoria; Mamatha Hanumappa, Oregon State University; James Wesley-Smith, Council for Scientific and Industrial Research; Charles A Hefer, Department of Botany, University of British Columbia; Alexander Myburg, University of Pretoria; Luke Solomon, Sappi Forests Shaw Research Center; Steven Strauss, Oregon State University

Flavonoid Supplementation: a New Method to Improve Eucalyptus Wood
Jorge Lepikson-Neto, Genomics and Expression Laboratory-UNICAMP; Leandro Costa Nascimento, Genomics and Expression Laboratory-UNICAMP; Eduardo L. O. Camargo, Genomics and Expression Laboratory-UNICAMP; Marcela M. Salazar, Genomics and Expression Laboratory-UNICAMP; Wesley L. Marques, Genomics and Expression Laboratory-UNICAMP; Ana Carolina Deckmann, Genomics and Expression Laboratory-UNICAMP; Gonçalo Amarante Guimarães Pereira, Genomics and Expression Laboratory- UNICAMP

Small RNA Regulatory Networks in Susceptible, Hypersensitive, and Resistant Genotypes of Cotton (Gossypium hirsutum) During Reniform Nematode (Rotylenchulus reniformis) Infestation
Bob Locy, Auburn University; Ruijuan Li, Auburn University; Narendra K. Singh, Auburn University; Hongtao Hu, Auburn University; Kathy Lawrence, Auburn University; David B. Weaver, Auburn University

Unraveling Unique Modes of Photosynthesis in Suaedoideae Using Genetic Networks Developed From Diverse Genomic and Transcriptomic Resources
Richard Sharpe, Molecular Plant Sciences Graduate Program,; Artemus Harper, Department of Horticulture, Washington State University; Sascha Offermann, Leibniz-Universität Hannover; Gerald E. Edwards, School of Biological Sciences, Washington State Univ; Amit Dhingra, Department of Horticulture, Washington State University

Transcriptome Profiling of Parthenocarpic Genes in Cucumber (Cucumis sativus L.) Reveals Global Effects of Multiple Phytohormone Signal Pathways
Ji Li, Nanjing Agricultural University; Li Cui, Nanjing Agricultural University; Qunfeng Lou, Nanjing Agricultural University; Jinfeng Chen, Nanjing Agricultural University

Progress in Understanding the Genomics of Invasiveness in a Model Perennial Weed
David Horvath, USDA-ARS; Brian Scheffler, USDA-ARS-MSA; Igor Andreev, Institute of Molecular Biology & Genetics; Wun S. Chao, USDA-ARS; James V. Anderson, USDA-ARS; Michael E. Foley, USDA-ARS; Munevver Dogramaci, USDA-ARS

Seq'ing Answers to Equine Common Variable ImmunoDeficiency
Rebecca L. Tallmadge, Department of Clinical Sciences; Lishuang Shen, Cornell University; M. Julia B. Felippe, Cornell University

Identification of Genes Differentially Expressed in Both Sheep and Cattle Muscle by Combined Trenbolone Acetate and Estradiol-17beta Implants
Brian Dalrymple, CSIRO Animal, Food and Health Sciences; Kritaya Kongsuwan, CSIRO Livestock Industries; Nadia de Jager, CSIRO Livestock Industries; Malcolm R. Knox, CSIRO Animal, Food and Health Sciences; Peter G. Allingham, CSIRO Animal, Food and Health Sciences; Antonio Reverter, CSIRO Animal, Food and Health Sciences; Nicholas James Hudson, CSIRO Animal, Food and Health Sciences; Paul Greenwood, Industry & Investment NSW; Ross Barnard, University of Queensland

Deciphering Regulation of Transcript Abundance in Maturing Bovine Oocytes
Juan M. Reyes, Animal Science, University of California; James L. Chitwood, Animal Science, University of California; Pablo J. Ross, Animal Science, University of California

Analysis of DNA Methylation Near the Transcription Starting Site of KPNA7 Gene During Bovine Early Embryonic Development
Lei Wang, West Virginia University; George W Smith, Michigan State University; Jianbo Yao, West Virginia University

Comparative Proteomic Analysis of Models of Mammary Cell Differentiation
Alyssa Conly, California Polytechnic State University; Laura Strand, California Polytechnic State University; Daniel Peterson, California Polytechnic State University

Gene Expression Analysis of in vivo and in vitro Matured Porcine Metaphase II Oocytes
Lindsay M. Cox, Utah State University; Clay Isom, Utah State University

Alterations of Cellular Gene Expression in Marek's Disease Virus Latently Infected Cells
Julie Hicks, North Carolina State University; Mohamed Goher, North Carolina State University; Nares Trakooljul, North Carolina State University; Hsiao-Ching Liu, North Carolina State University

Characterizing Differential Pectoralis Muscle Production and Gene Expression Between Modern and Heritage Gallus Broiler Lines
Richard V. Davis, University of Delaware; Chris Ashwell, North Carolina State University; Susan J Lamont, Iowa State University; Mike E Persia, Iowa State University; Max F. Rothschild, Iowa State University; Carl J. Schmidt, University of Delaware

Comparative Transcriptomic Dynamics During Embryonic Gonadal Development in Turtles with Genotypic and Temperature-Dependent Sex Determination
Srihari Radhakrishnan, Iowa State University; Andrew J Severin, Iowa State University; Robert Literman, Iowa State University; Nicole Valenzuela, Iowa State University

Comparison of RNA Interference Genes Among Hessian Fly, Flour Beetle, Fruit Fly, Mosquito and Nematode
Christie Williams, USDA-ARS Crop Production and Pest Control Research Unit; Jacob Shreve, Purdue University; Subhashree Subramanyam, Purdue University; Alisha Johnson, USDA-ARS at Purdue University; Richard H. Shukle, USDA-ARS at Purdue University

Differential Expression of Genes in the Gibberellin Biosynthetic Pathway Involved in Adaptation to Water Stress in Wild Emmer Wheat Triticum dicoccoides
Tamar Krugman, University of Haifa, Institute of Evolution; Abraham B. Korol, University of Haifa, Institute of Evolution; Tzion Fahima, Institute of Evolution, University of Haifa

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