Next Generation Genome Annotation and Analysis

We have entered a world where individual investigators can afford to sequence new eukaryotic genomes. While large-scale sequencing is becoming routine, genome annotation and analysis is much less so. Many genome projects have stalled in the final stages of annotation and analysis, despite having in hand a sequenced and assembled genome. A central challenge for new genome projects is how to manage the genome annotation process and to integrate those annotations with downstream comparative genomics, expression and phenotype-genotype association studies. Highlighting a number of recent and successful genome annotation and analysis efforts, this session provides a practical introduction to annotating your new genome, and integrating the results with downstream analyses. This session will prove useful to anyone involved in a new eukaryotic genome project.
Date: Saturday, January 12, 2013
Time: 3:50 PM-6:00 PM
Room: Towne
Organizer:
Barry Moore
3:50 PM
Welcoming Remarks


4:10 PM
4:30 PM
Maker-P: Tool For De-Novo Annotation and Management Of Plant Genomes
MeiYee Law, University of Utah; Michael S. Campbell, University of Utah; Zev Kronenberg, University of Utah; Kevin L. Childs, Michigan State University; Ning Jiang, Michigan State University; Shinhan Shiu, Michigan State University; Yanni Sun, Michigan State University; Mark Yandell, University of Utah

4:50 PM
100 Million Years of Social Evolution
Juergen Gadau, Arizona State University

5:10 PM
Utilization and Improvement Of Existing Annotation and The Incorporation Of New Gene Models In The Medicago truncatula Genome Using The MAKER Annotation Pipeline
Kevin L. Childs, Michigan State University; Shelby Bidwell, J. Craig Venter Institute; Michael S. Campbell, University of Utah; Vivek Krishnakumar, J. Craig Venter Institute; MeiYee Law, University of Utah; Barry Moore, University of Utah; Benjamin Rosen, J. Craig Venter Institute; Haibao Tang, J. Craig Venter Institute; Christopher Town, J. Craig Venter Institute; Mark Yandell, University of Utah

5:30 PM
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