31
Genes & Pathways (Gene Expression, Proteomics, Metabolomics): Functional Analysis

Date: Monday, January 13, 2014
Time: 7:00 AM-10:00 PM
Room: Grand Exhibit Hall
Temporal RNA-Seq Transcriptional Profiling in the Facultative Crassulacean Acid Metabolism (CAM) Model Mesembryanthemum crystallinum
Won Cheol Yim, Department of Biochemistry and Molecular Biology, University of Nevada, Reno; Bahay G. Bilgi, Department of Biochemistry and Molecular Biology, University of Nevada, Reno; Rebecca L. Albion, Department of Biochemistry and Molecular Biology, University of Nevada, Reno; Karen A. Schlauch, Nevada Center for Bioinformatics, University of Nevada, Reno; John C. Cushman, Department of Biochemistry and Molecular Biology, University of Nevada, Reno

Loosening the Grip on Flowering and Vegetative Growth Control: MiR156 is the Ket to Enhancing Biomass Yield in Medicago sativa.
Margaret Y. Gruber, Agriculture and Agri-Food Canada; Abdelali Hannoufa, Agriculture and Agri-Food Canada; Banyar Aung, Agriculture and Agri-Food Canada; Ying Wang, Agriculture and Agri-Food Canada; Lisa Amyot, Agriculture and Agri-Food Canada; Min Yu, Agriculture and Agri-Food Canada; Shu Wei, Anhui Agricultural University

Identification and Characterization of CNGC18 as a Ca2+-Permeable Divalent Cation-Selective Channel in Arabidopsis Pollen Tubes
Cui-Fang Fei, Institute of Plant Physiology and Ecology, SIBS, CAS; Qi-Fei Gao, Institute of Plant Physiology and Ecology, SIBS, CAS; Jing-Yun Dong, Institute of Plant Physiology and Ecology, SIBS, CAS; Li-Li Gu, Shanghai Institute of Plant Physiology and Ecology, SIBS, CAS; Yong-Fei Wang, Shanghai Institute of Plant Physiology and Ecology, SIBS, CAS

Cannabis sativa; a Drugmaker's DevKit - Crafting Medicines for Complex Maladies
Geoffrey W. Guy, GW Pharmaceuticals plc; James S. Brodie, GW Pharmaceuticals plc

The Roslin-Hub: Sharing Functional Annotations for Farmed and Companion Animals
Lel Eory, Roslin Institute University of Edinburgh; David Burt, Roslin Institute Univ of Edinburgh; Tim Hubbard, Wellcome Trust Sanger Institute; Steve M. J. Searle, Wellcome Trust Sanger Institute; Paul Flicek, European Molecular Biology Laboratory; Alan L. Archibald, The Roslin Institute and R(D)SVS, University of Edinburgh

Induced Active DNA Demethylation in Mammalian Cells Using Arabidopsis Demeter 5-Methylcytosine DNA Glycosylase
Young Geun Mok, Department of plant science, SNU; Jin Hoe Huh, Seoul National University

PlantSEED: A Resource for High-Throughput Comparison, Functional Annotation, and Metabolic Modeling of Plant Genomes
Samuel M. D. Seaver, Argonne National Laboratory; Sveta Gerdes, Argonne National Laboratory; Oceane Frelin, University of Florida; Claudia Ortiz, University of Florida; Louis Bradbury, University of Florida; Remi Zallot, University of Florida; Ghulam Hasnain, University of Florida; Thomas Niehaus, University of Florida; Basma El Yacoubi, University of Florida; Shiran Pasternak, Cold Spring Harbor Laboratory; Robert Olson, Argonne National Laboratory; Gordon Pusch, Argonne National Laboratory; Ross Overbeek, Argonne National Laboratory; Rick Stevens, Argonne National Laboratory; Valerie de Crecy Lagard, University of Florida; Doreen Ware, Cold Spring Harbor Laboratory; Andrew Hanson, University of Florida; Christopher Henry, Argonne National Laboratory

A New Approach Using ‘Spectral Content Profiling’ for in-Depth Plant DNA QC during NGS Library Preparation
Sabine Van Glabeke, ILVO-Plant Sciences Unit-Growth and Development; Tom Ruttink, ILVO-Plant Sciences Unit-Growth and Development; Tony Montoye, TRINEAN

Expression Analysis of Brachypodium Genes Involved in the ADP-Glucose Production for Storage Starch Biosynthesis
Tadamasa Sasaki, RIKEN Center for Sustainable Science; Ayako Hironaka, Tokyo University of Science; Hiroaki Shimada, Tokyo University of Science; Kazuo Shinozaki, RIKEN CSRS; Keiichi Mochida, RIKEN Center for Sustainable Resource Science

Knockdown of CBF1 and CBF3 Genes Reduces the Capacity for Cold Acclimation and Freezing Tolerance in Brachypodium distachyon
Shui-zhang Fei, Iowa State University; Jingjie Hao, Iowa State University; Jiangli Dong, China Agricultural University

Expression Analysis of Ossweet Genes Induced by xa13 Compatible Xanthomonas oryzae pv oryzae Isolates
Rhitu Rai, National Research Centre on Plant Biotechnology; Payal Gupta, National Research Centre on Plant Biotechnology; Priya Gambhir, National Research Centre on Plant Biotechnology; Ankita Sharma, National Research Centre on Plant Biotechnology

Discovery of Differentially Expressed Genes Under Salt Stress Conditions Employing mRNA and Polysome RNA-Seq in Rice
Ramanjulu Sunkar, Oklahoma State University; Yongfong Li, Oklahoma State University; Yun Zeng, Oklahoma State University; Lakshminarayana R Vemireddy, Oklahoma State University

Characters and Subcellular Localization of OsVDAC3 Protein and Its Effects on Rice Growth
Gang Cheng, South-Central University for Nationalities; Linpeng Li, South-Central University for Nationalities; Yingjian Zhong, South-Central University for Nationalities; Yanping Tan, South-Central University for Nationalities; Yonghua Qin, South-Central University for Nationalities; Xin Xu, South-Central University for Nationalities; Jie Zhou, South-Central University for Nationalities; Xuequn Liu, South-Central University for Nationalities; Chuntai Wang, South-Central University for Nationalities

Functional Characterization of Rice Aspartic Protease (OsAP77) Gene in Response to Bacterial and Fungal Pathogens
Masamichi Nishiguchi, Ehime University; Md. Mahfuz Alam, Ehime University; Akio Miyao, National Insititute of Agrobiological Resources; Hirohiko Hirochika, National Insititute of Agrobiological Resources; Hidemitsu Nakamura, University of Tokyo; Hiroaki Ichikawa, National Insititute of Agrobiological Resources; Kappei Kobayashi, Ehime University; Naoto Yamaoka, Ehime University

Quantitative Proteomic Analysis for Waxy Rice Grain and Anther Development
Joohyun Lee, Konkuk University; Wondo Lee, Konkuk University; Jaebok Cho, Konkuk University; Hijin Kim, Konkuk University; Soon Wook Kwon, Pusan University

in situ Fourier Transform Infrared Spectroscopy of Cellular Properties of Mature Embryos of Omap Rice Species
Yue-ie C. Hsing, Institute Plant and Microbial Biology, Academia Sinica,; Ming-der Shih, Institute of Plant and Microbial Biology, Academia Sinica; Folkert Hoekstra, Laboratory of Plant Physiology, Wageningen University

Analyzing Multiple 2D Protein Gel Images with Matlab Image Processing Toolbox for the Identification of Maize Proteins Associated with the Resistance to Aflatoxin Accumulation
Alka Tiwari, Mississippi State University; Paul Williams, USDA ARS Corn Host Plant Resistance Research Unit; Erik Mylorie, USDA-ARS, Corn Host Plant Resistance Research Unit; Gary Windham, USDA-ARS, Corn Host Plant Resistance Research Unit; Ashli Brown, Mississippi State University; Din Pow Ma, Mississippi State University; Xueyan Shan, Mississippi State University

Ascertaining the Co-Expression Networks of Homeobox Genes in Maize
Lin Li, University of Minnesota; Roman Briskine, University of Minnesota; Robert Schaefer, University of Minnesota; Marie Javelle, Cold Spring Harbor Laboratory; Katherine Petsch, Cold Spring Harbor Laboratory; Michael Scanlon, Cornell University; Patrick S. Schnable, Iowa State University; Marja Timmermans, Cold Spring Harbor Laboratory; Jianming Yu, Iowa State University; Chad Myers, University of Minnesota; Nathan M. Springer, University of Minnesota; Gary Muehlbauer, University of Minnesota

Large-Scale Cloning and Characterization of Genes Controlling Grain Yield for Deciphering of the Molecular Basis of Grain Yield and Development of a Gene-Based Breeding System in Maize
Meiping Zhang, Texas A&M University; Hui Zhi, Texas A&M University; Chin-Sheng Chang, Texas A&M University; Yang Zhang, Texas A&M University; Yun-Hua Liu, Texas A&M University; Jun Zhu, Zhejiang University; Wenwei Xu, Texas A&M University; Seth Murray, Texas A&M University; Hong-Bin Zhang, Texas A&M University

Application of Network Methods for Describing Empirical Gene Expression Relationships in Quantitative Real Time PCR (qRT-PCR) Datasets
Matthew C. Asters, Mississippi State University; Paul Williams, USDA ARS Corn Host Plant Resistance Research Unit; Andy Perkins, Department of Computer Science and Engineering; Erik Mylorie, USDA-ARS, Corn Host Plant Resistance Research Unit; Gary Windham, USDA-ARS, Corn Host Plant Resistance Research Unit; Xueyan Shan, Mississippi State University

Comparative RNA-Seq Transcriptome Analysis of Wheat and Brachypodium after Fungal Infection
Jonathan J Powell, The University of Queensland; Timothy L Fitzgerald, CSIRO Plant Industry; Jiri Stiller, CSIRO Plant Industry; Terri Cameron, CSIRO Plant Industry; Mandy Hsia, USDA-ARS; John Vogel, USDA-ARS; John M. Manners, CSIRO Agriculture; Robert Henry, University of Queensland QAAFI; Kemal Kazan, CSIRO Plant Industry

Resistance Mechanism of Yr36 to Wheat Stripe Rust
Jin-Ying Gou, University of California Davis; Dario Cantu, University of California Davis; Albor Dobon-Alonso, John Innes Centre; Cristobal Uauy, John Innes Centre; Takafumi Midorikawa, University of California Davis; Kentaro Inoue, University of California Davis; Daolin Fu, Shandong Agricultural University; Ann Blechl, USDA-ARS; Jorge Dubcovsky, University of California

Genomics and Heterosis in Hexaploid Wheat
Zhongfu Ni, China Agricultural University; Yingyin Yao, China Agricultural University; Huiru Peng, China Agricultural University; Zhaorong Hu, China Agricultural University; Qixin Sun, China Agricultural University

Mapping of Agronomic, Phenology-Related and Metabolic Traits in Wheat (Triticum aestivum L.) Grown in a Water-Limited Environment
Camilla B. Hill, Australian Centre for Plant Functional Genomics; Julian D. Taylor, University of Adelaide; James Edwards, Australian Grain Technologies; Diane Mather, Australian Centre for Plant Functional Genomics; Peter Langridge, Australian Centre for Plant Functional Genomics; Antony Bacic, The University of Melbourne; Ute Roessner, Australian Centre for Plant Functional Genomics

microRNA Expression Analysis in Wheat (Triticum aestivum) Seedling Inoculated with Endophytic Rhizobia Azorhizobium caulinodans ORS571
Huawei Liu, Northwest A&F University; Qiang Li, Northwest A&F University; Qinhu Wang, Northwest A&F University; Yongchao Chen, Northwest A&F University; Xiaojun Lin, Northwest A&F University; Chao Sun, Northwest A&F University; Hongxia Pang, Northwest A&F University; Hongli Xiao, Northwest A&F University; Baohong Zhang, East Carolina University

RNAseq Transcriptomic Profiles of Virulent and Avirulent Diuraphis noxia Feeding on D. noxia-Resistant and Susceptible Wheat  
Deepak Kumar Sinha, Kansas State University; Charles Michael Smith, Kansas State University

Identification and Characterization of Rye Genes Silenced in Allohexaploid Triticale
Hala Badr Khalil, Ain Shams Ubniversity; Mohammad-Reza Ehdaeivand, Concordia University; Yong Xu, Agriculture and Agri-Food Canada; Michele Frick, Agriculture and Agri-Food Canada; Samar El zein, Concordia University; André Laroche, Agriculture and Agri-Food Canada; Patrick Gulick, Concordia University

Characterization of Allelic Variants in Sugarcane Genes Related to Drought Stress
Larissa Mara Andrade, Faculdade de Medicina de Ribeirão Preto, FMRP/USP; Maria Helena de Souza Goldman, Faculdade de Medicina de Ribeirão Preto, FMRP/USP; Paula M. Nobile, Centro de Cana, Instituto Agronômico; Thiago Romanos Benatti, Texas A&M Agrilife Research and Extension Center; Jorge A. Da Silva, Texas A&M Agrilife Research; Antonio Figueira, University of Sao Paulo; Ana Lilia Alzate Marin, Faculdade de Medicina de Ribeirão Preto, FMRP/USP; Michael Santos Brito, UNICAMP; Rafael Vasconcelos Ribeiro, UNICAMP; Silvana Creste, Centro de Cana - Instituto Agronômico

Transcriptional Differences of Mesic and Xeric Ecotypes of an Ecologically-Dominant Prairie Grass Andropogon gerardii to Abiotic Stress
Miranda Gray, Cornell University, Dept of Ecology & Evol Biology; Jennifer Shelton, Kansas State University, Bioinformatics Center; Sanjay Chellapilla, Kansas State University, Bioinformatics Center; Nora Bello, Kansas State University, Department of Statistics; Susan Brown, Kansas State University, KSU Bioinformatics Center; Alina Akhunova, Integrated Genomics Facility; Hanquan Liang, Integrative Genomics Facility, Kansas State University; Karen Garrett, Kansas State University, Department of Plant Pathology; Eduard Akhunov, Kansas State University, Department of Plant Pathology; Theodore Morgan, Kansas State University, Department of Biology; Loretta Johnson, Kansas State University, Department of Biology

Molecular Study of a New Active Site in Soybean Malate Dehydrogenase 1
Jiawen Li, Northwest University; Lei Liu, Northwest University; Reid Palmer, Iowa State University; Min Xu, Northwest University

The Transition from Primary siRNAs to Amplified Secondary siRNAs that Regulate Chalcone Synthase During Development of Glycine max Seed Coats
Young B. Cho, University of Illinois; Sarah I. Jones, University of Illinois; Lila Vodkin, University of Illinois

Translating Knowledge Obtained from Arabidopsis to Engineer Broad Resistance in Soybean to Two Nematode Genera
Benjamin F. Matthews, USDA-ARS Soybean Genomics Lab; Reham Youssef, USDA. ARS Soybean Genomics Laboratory; Hunter Beard, USDA ARS; Margaret MacDonald, USDA ARS; Eric Brewer, USDA-ARS Soybean Genomics Lab

Polyamine Oxidase and Its Possible Role in the Soybean-Fusarium virguliforme Interaction
Jordan Lillian Baumbach, Iowa State Univeristy; Catherine D Brooke, Iowa State University; Madan K. Bhattacharyya, Iowa State University

A Novel Arabidopsis thaliana Nonhost Resistance Gene Confers Resistance Against an Oomycete and a Fungal Pathogen in Soybean
Rishi Sumit, Iowa State University; Binod B. Sahu, Iowa State University; Madan K. Bhattacharyya, Iowa State University

Phloem-Specific Overexpression of the Sucrose Transporter, AtSUC2, and Robust Plant Growth
Junqi Liu, Department of Agronomy and Plant Genetics, University of Minnesota; Anke Reinders, University of Minnesota; Bruna Bucciarelli, USDA-ARS, University of Minnesota; Susan Miller, USDA-ARS; Robert M. Stupar, Department of Agronomy and Plant Genetics, University of Minnesota; John W. Ward, University of Minnesota; Carroll P. Vance, University of Minnesota; USDA-ARS

DNA Methylation Plays a Role in Defining the Developmental Expression Profile of QQS, an Arabidopsis thaliana de novo Originated Gene
Michel Vincentz, State University of Campinas -UNICAMP; Raphael Ricon, State University of Campinas -UNICAMP; Amanda B Silveira, State University of Campinas -UNICAMP; Cleverson Matiolli, State University of Campinas -UNICAMP; Americo Viana, Unicamp

Long Non-Coding RNAs are Required for Epigenetic Repression of Floral Genes in Arabidopsis
Jae Bok Heo, Dong-A Uniersity, Busan, Korea; Min Ji Hong, Department of Molecular Biotechnology Dong-A University

Characterization of Small GTP Binding Protein, OsRab11 in JA-Mediated Defense Signaling
Jae Bok Heo, Dong-A Uniersity, Busan, Korea; Yun Mi Lee, Department of Molecular Biotechnology Dong-A University

Genome-Wide Identification and Characterization of WRKY Gene Family of Brassica
Abdul Kayum, Sunchon National University; Jong-In Park, Sunchon National University; Nasar Uddin Ahmed, Sunchon National University; Hee-Jeong Jung, Sunchon National University; Hye-Ran Kim, Korea Research Institute of Bioscience and Biotechnology; Yong-Gu Cho, Chungbuk National University; MiYoung Chung, Sunchon national university; Illsup Nou, Sunchon National University

MADS-box Family Genes: Genome-Wide Identification, Characterization and Expression Profiling Under Stresses in Brassica
Gopal Saha, Sunchon National University; Jong-In Park, Sunchon National University; Hee-Jeong Jung, Sunchon National University; Nasar Uddin Ahmed, Sunchon National University; MiYoung Chung, Sunchon national university; Masao Watanabe, Tohoku University; Illsup Nou, Sunchon National University

Characterization of LIM Gene Family and Stress Induced Expression Profiling in Brassica
Jong-In Park, Sunchon National University; Nasar Uddin Ahmed, Sunchon National University; Hee-Jeong Jung, Sunchon National University; T. Senthil Kumar, Sunchon National University; MiYoung Chung, Sunchon national university; Yong-Gu Cho, Chungbuk National University; Masao Watanabe, Tohoku University; Illsup Nou, Sunchon National University

Characterization and Expression Analysis of Calcineurin B-like (CBL) Family Genes in Brassica
Hee-Jeong Jung, Sunchon National University; Jong-In Park, Sunchon National University; Nasar Uddin Ahmed, Sunchon National University; T. Senthil Kumar, Sunchon National University; Hye-Ran Kim, Korea Research Institute of Bioscience and Biotechnology; MiYoung Chung, Sunchon national university; Illsup Nou, Sunchon National University

Characterization of Anthocyanins Biosynthetic Genes and their Association with Cold Tolerance in Brassica
Nasar Uddin Ahmed, Sunchon National University; Jong-In Park, Sunchon National University; Hee-Jeong Jung, Sunchon National University; T. Senthil Kumar, Sunchon National University; MiYoung Chung, Sunchon national university; Illsup Nou, Sunchon National University

Genome-Wide Identification and Characterization of Cold and Freezing Stress Responsive Genes in Brassica
Nasar Uddin Ahmed, Sunchon National University; Jong-In Park, Sunchon National University; Hee-Jeong Jung, Sunchon National University; Seongyul Yang, sunchon national university; MiYoung Chung, Sunchon national university; Illsup Nou, Sunchon National University

Genome Structures and Transcriptomes Signify Evolutionary Trajectories for Multi-Ion Tolerance and Niche Adaptation in Schrenkiella parvula (formerly Thellungiella parvula)
Dong-Ha Oh, Louisiana State University; Hyewon Hong, University of Illinois at Urbana-Champaign; Sang Yeol Lee, Gyeongsang National University, South Korea; Hans Bohnert, University of Illinois at Urbana-Champaign; Maheshi Dassanayake, Louisiana State University

MADS - Flowering C (FLC) Sequences from the Early Embryonic Stages of Moringa oleifera Lam.: Identified and Cloned
Zomesh A. Maini, Ateneo de Manila University, Department of Biology; Vivian A. Panes, Ateneo de Manila University, Department of Biology

Identification and Partial Sequencing of Oil Body Associated Proteins from the Mature Seed Embryo of Moringa oleifera Lam
Abigail Loren T. Uy, Ateneo de Manila University, Department of Biology; Vivian A. Panes, Ateneo de Manila University, Department of Biology

Characterization of the GBSSI Gene Involved in Starch Waxy Mutation in Cassava (Manihot esculenta Crantz.)
Diana Katherine Castillo Avila, CIAT; Hernan Ceballos, CIAT; Dominique Dufour, CIAT; Nelson Morante, CIAT; Teresa Sanchez, CIAT; Clair Hershey, International Center for Tropical Agriculture – CIAT; L. Augusto Becerra Lopez-Lavalle, International Center for Tropical Agriculture, CIAT

Comparative Transcriptome Analysis of Cassava Plants Differing in Their Resistance Level to Cassava Brown Streak Virus
Sophie Bouvaine, University of Greenwich, Natural resources institute; Maruthi Gowda, University of greenwhich- Natural resources institute

Potential Application of Virus-Induced Gene Silencing in Cucurbit Plants Using Cucumber Fruit Mottle Mosaic Virus Vector
Sun-Ju Rhee, Dept of Integrative Plant Science, Chung-Ang University; Yoon-Jeong Jang, Dept of Integrative Plant Science, Chung-Ang University; Gung-Pyo Lee, Dept of Integrative Plant Science, Chung-Ang University

Differences in Cold Hardiness and Dehydrin Gene Expressions in Response to Artificial Deacclimation and Reacclimation in Peach (Prunus persica)
Seolah Kim, Chungbuk National University; Hyunsuk Shin, Chungbuk National University; Keumsun Kim, Chungbuk National University; Young-Jae Oh, Chungbuk National University; Daeil Kim, Chungbuk National University

Changes in Cold Hardiness and P5CS Gene Expression of Four Peach (Prunus persica) Cultivars during Deacclimation
Daeil Kim, Chungbuk National University; Keumsun Kim, Chungbuk National University; Young-Jae Oh, Chungbuk National University; Seolah Kim, Chungbuk National University; Hyunsuk Shin, Chungbuk National University

Isolation and Characterization of the Resistance Gene Sequences with NBS-LRR Domains in Citrus
Tuyong Yi, Hunan Agricultural University; Ran An, Hunan Agricultural University; Yanyun Hong, Hunan Agricultural University; Ziniu Deng, Hunan Agricultural University; Qiming Xiao, Hunan Agricultural University; Liangying Dai, Hunan Agricultural University; Shiming Liu, Hunan Agricultural University

Integrating Transcriptomics and Proteomics: A Powerful Approach for the Identification of Protein Sequence Variants in the Genus Populus
Paul E. Abraham, Oak Ridge National Laboratory; Xiaojing Wang, Vanderbilt University School of Medicine; Priya Ranjan, Oak Ridge National Laboratory; Bing Zhang, Vanderbilt University School of Medicine; Robert L. Hettich, BioEnergy Science Center, Oak Ridge National Laboratory; Gerald A. Tuskan, Oak Ridge National Laboratory

Genome-Wide SNP Association, -Omics and Genetic Transformation Approaches Inform Cellulose Biosynthesis Pathway in a Bioenergy Plant Model
Udaya C Kalluri, BioEnergy Science Center, Oak Ridge National Laboratory; Raja Payyavula, BioEnergy Science Center, Oak Ridge National Laboratory; Anthony Bryan, BioEnergy Science Center, Oak Ridge National Laboratory; Kelsey Yee, BioEnergy Science Center, Oak Ridge National Laboratory; Jay Chen, BioEnergy Science Center, Oak Ridge National Laboratory; Wellington Muchero, BioEnergy Science Center, Oak Ridge National Laboratory; Priya Ranjan, BioEnergy Science Center, Oak Ridge National Laboratory; Gerald A. Tuskan, BioEnergy Science Center, Oak Ridge National Laboratory

Transcriptome Analysis of Medicinal Plant Salvia miltiorrhiza and Identification of Genes Related to Tanshinone Biosynthesis
Lei Yang, Shanghai Institute of Plant Physiology and Ecology; Chang-Qing Yang, Shanghai Institute of Plant Physiology and Ecology; Yu Kong, Shanghai Chenshan Botanical Garden; Yu-Kun Wei, Shanghai Chenshan Botanical Garden; Xiao-Ya Chen, Shanghai Institute of Plant Physiology and Ecology

Diterpenes and Transcriptional Profile of CYPs Genes during Coffea arabica fruit  Development
Suzana Tiemi Ivamoto, Instituto Agronômico do Paraná; Priscila Mary Yuyama, Instituto Agronômico do Paraná; Cíntia Sorane Good-Kitzberger, Instituto Agronômico do Paraná; Maria Brigida dos Santos Scholz, Instituto Agronômico do Paraná; Luiz G. E. Vieira, IAPAR (LBI-AMG); Osvaldo Reis Junior, Genomics and Expression Laboratory- UNICAMP; Marcelo Falsarella Carazzolle, Genomics and Expression Laboratory - University of Campinas (UNICAMP); Gonçalo Amarante Guimarães Pereira, Genomics and Expression Laboratory - University of Campinas (UNICAMP); Douglas S. Domingues, Instituto Agronômico do Paraná; Luiz F. P. Pereira, Embrapa Café

Using RNA-Seq Transcriptome Profiling in support of Field Based Strategies to improve Cotton Productivity under Water Deficit Stress
B. Todd Campbell, USDA-ARS; Megan Bowman, Michigan State University; Wonkeun Park, Clemson University; Phil Bauer, USDA-ARS; Brian Scheffler, USDA-ARS; Josh Udall, Brigham Young University; Don C. Jones, Cotton Incorporated

Isolation and Characterization of Volatile Terpene Synthases in Cotton
Chang-Qing Yang, Shanghai Institute of Plant Physiology and Ecology; Lei Yang, Shanghai Institute of Plant Physiology and Ecology; Ju-Xin Ruan, Shanghai Institute of Plant Physiology and Ecology; Lingjian Wang, Shanghai Institute of Plant Physiology and Ecology; Xiao-Ya Chen, Shanghai Institute of Plant Physiology and Ecology

Molecular Characterization and Functional Analysis of the Receptor-like Kinase SOBIR1 on Tomato Plants Infected By a Potyvirus
Alessandra Tenório Costa, IB - UNESP - Department of Genetics; Juliana Pereira Bravo, IB - UNESP - Department of Genetics; Renate Krause Sakate, Plant Protection Department; Ivan G. Maia, IB - UNESP - Department of Genetics

Down-Regulation of AGO2 Expression in Nicotiana benthamiana Does Not Compromise Normal Development but Interferes with Antiviral Silencing of a Tombusvirus
Denis Odokonyero, Texas A&M University; Maria R. Mendoza, Texas A&M University; Veria Alvarado, Texas A&M University; Jiantao Zhang, Virginia Tech University; Xiaofeng Wang, Virginia Tech University; Herman B. Scholthof, Texas A&M University

Transcriptomic Analysis of Transgenic Tobacco Plants Overexpressing a Mitochondrial Uncoupling Protein (UCP)
Ivan G. Maia, IB - UNESP - Department of Genetics; Alessandra Vasconcellos Nunes, IB - UNESP - Department of Genetics; Paulo E. Martins Ribolla, IBB - UNESP - Department of Parasitology; Marcio Luis Acencio, IB - UNESP - Department of Biophysics

Extensive Rewiring of Transcriptional Regulatory Networks and Pleiotropic Phenotypes in Tobacco Expressing a Hairpin of the Tnt1 Retrotransposon
Danielle Maluf Quintanilha, University of Sao Paulo; Erika Maria de Jesus, University of Sao Paulo; Fabricio Martins Lopes, Federal University of Technology - Parana; Marie-Anne Van Sluys, Universidade de Sao Paulo

Multiple Recognitions of RXLR Effectors Is Associated with Nonhost Resistance of Pepper Against Phytophthora infestans
Hyun-Ah Lee, Seoul National University; Shin-Young Kim, Seoul National University; Sang-Keun Oh, Korea Research Institute of Bioscience & Biotechnology; Seon-In Yeom, Department of plant science, PGBI of CALS, SNU; Saet-byul Kim, Department of plant science, PGBI of CALS, SNU; Myung-Shin Kim, Department of Plant Science, Plant Genomics and Breeding Institute and Interdisciplinary Program in Agricultural Genomics, Seoul National University; Sophien Kamoun, The Sainsbury Laboratory; Doil Choi, Seoul National University

Comparative Transcriptome Analyses of Parasitic Plants Reveal Core Parasite Genes and Possible Origin of the Haustorium
Zhenzhen Yang, Penn State University; Eric Kenneth Wafula, Penn State University; Loren Honaas, Penn State University; Paula Ralph, Penn State University; Yeting Zhang, Penn State University; Lena Landherr, Penn State University; Norman Wickett, Chicago Botanical Garden; Kan Huang, University of Virginia; Yongde Bao, University of Virginia; Monica Fernandez-Aparicio, Virginia Tech University; Malay Das, Presidency University; Pradeepa Bandaranayake, Department of Crop Science, University of Peradeniya; Biao Wu, University of California-Davis; Michael P. Timko, University of Virginia; John Yoder, University of California-Davis; James H. Westwood, Virginia Tech University; Claude dePamphilis, Penn State University

Real Time qPCR Assessed Macroalgal Bloom Formation Patterns within the Genus Ulva (U. rigida & U. compressa) in Response to Temperature Thresholds
Noe B. Mercado, Salve Regina University; Tania Aires, University of Rhode Island; Shennel Gelin, Salve Regina University; Hope Allen, Salve Regina University; Carol Thornber, University of Rhode Island; John David Swanson, Salve Regina University

Deep Sequencing of the Greater Duckweed Transcriptome at the Onset of Its Dormancy
Wenqin Wang, Waksman Institute, Rutgers University; Yongrui Wu, Rutgers Universtity; Joachim Messing, Rutgers University

An EST Dataset for Metasequoia Buds and Functional Characterization of a Leafy and a FT Homolog
Ying Zhao, Dept. of Genetics & Biochemistry-Clemson University; Margaret Staton, clemson university; Sha Tang, Beijing Forestry University; Lan Li, Beijing Forestry University; Xiao Han, Beijing Forestry University; Xinli Xia, National Engineering Laboratory for Tree Breeding; Weilun Yin, Beijing Forestry University; Haiying Liang, Clemson University

Transcriptional and Morphological Study for the Role of Ethylene in the Response to Inclination in Pine
Raul Herrera, Institute of Biological Sciences - University of Talca; Patricio Ramos, Institute of Biological Sciences - University of Talca; Maria A. Moya-León, Institute of Biological Sciences - University of Talca

Transcriptome Profiling of Bovine Skin from Tropically-Adapted Indicine and Temperate-Adapted Taurine Cattle Using RNA-Seq
Oyeyemi O. Ajayi, Cornell University; Sunday O. Peters, Berry College; Waqas Ahmed Khan, Cornell University; Fidalis Denis N. Mujibi, International Livestock Research Institute (ILRI); Peng Shi, Kunming Institute of Zoology; Christian O.N. Ikeobi, Federal University of Agriculture; Ikhide G. Imumorin, Cornell University

Sequence Analysis and Tissue Expression of the Putative Bovine Imprinted ASCL2 Gene
Oladeji Bamidele, Int'l Prog College of Agric & Life Sci Cornell Univ; Ofelia G. Omitogun, Obafemi Awolowo University; Marcos De Donato, Lab. Genetica Molecular, IIBCA,; Sunday O. Peters, Dept. of Animal Science; Ikhide G. Imumorin, Int'l Prog College of Agric & Life Sci Cornell Univ

Identification of Large Intergenic Non-Coding RNAs in Bovine Muscle Using Next-Generation Transcriptomic Sequencing
Dominique Rocha, INRA UMR1313 Animal Genetics and Integrative Biology; Coline Billerey, INRA; Mekki Boussaha, INRA UMR1313 Animal Genetics and Integrative Biology; Diane Esquerré, INRA GeT-PlaGe Genomics Facility - GenPhySe; Anis Djari, INRA SIGENAE; Christophe Klopp, INRA - SIGENAE; Daniel Gautheret, Université d'Orsay

Age Related Changes in Bovine Subcutaneous Fat Proteome
Josue Moura Romao, University of Alberta; Maolong He, Agriculture and Agri-Food Canada; Tim McAllister, Agriculture and Agri-Food Canada; Leluo Guan, University of Alberta, Edmonton, AB, Canada

The Effect of Breed and Sex on Drug Depletion and Differential Gene Expression Associated with Drug Metabolism after Fenbendazole and Flunixin Administration
Jeremy Howard, NCSU; Melissa Ashwell, NCSU; Ronald Baynes, NCSU; Jim Brooks, NCSU; James Yeatts, NCSU; Brittany Bellis, NCSU; Patricia Routh, NCSU; Christian Maltecca, NCSU

Quantification of TFAM Expression in Pig
Andrej Rencelj, University of Ljubljana, Biotehnical faculty; Peter Dovc, University of Ljubljana, Biotechnical Faculty

Gene Co-Expression Network Analysis Identifies Genes Associated with Varying Responses to Salmonella Infection in Pigs
Graham S Plastow, University of Alberta; Arun Kommadath, Dept. of AFNS, University of Alberta; Hua Bao, Dept. of AFNS, University of Alberta; Adriano S. Arantes, University of Alberta; Christopher K. Tuggle, Department of Animal Science, Iowa State University; Shawn M.D. Bearson, USDA/ARS/National Animal Disease Center; Le Luo Guan, Department of Agricultural, Food and Nutritional Science; Paul Stothard, University of Alberta

Effect of Maternal Nutrition on the Transcriptome of Fetal Muscle in Sheep
Francisco Peñagaricano, University of Wisconsin; Guilherme J. M. Rosa, University of Wisconsin; Amy Radunz, University of Wisconsin; Hasan Khatib, University of Wisconsin Madison

Modifications in the Gene Expression of Microglia Following Peripheral Mycobacterium Challenge
Scott E. Nixon, University of Illinois at Urbana-Champaign; Dianelys Gonzalez-Peña Fundora, University of Illinois at Urbana-Champaign; Marcus A. Lawson, University of Illinois at Urbana-Champaign; Robert H. McCusker, University of Illinois at Urbana-Champaign; Jason C. O'Connor, University of Texas Health Science Center at San Antonio; Robert Dantzer, University of Texas MD Anderson Cancer Center; Keith W. Kelley, University of Illinois at Urbana-Champaign; Sandra L. Rodriguez Zas, University of Illinois at Urbana-Champaign

Characterization of the Microglia Transcriptome in IDO1 Knockout and Wild-Type Mice
Dianelys Gonzalez-Peña Fundora, University of Illinois at Urbana-Champaign; Scott E. Nixon, University of Illinois at Urbana-Champaign; Bruce R. Southey, University of Illinois at Urbana-Champaign; Robert Dantzer, University of Texas MD Anderson Cancer Center; Keith W. Kelley, University of Illinois at Urbana-Champaign; Sandra L. Rodriguez Zas, University of Illinois at Urbana-Champaign

Transcriptome Analysis of Early Reproductive Tract Development in the Turkey Using RNA-Seq
Sungwon Kim, Virginia Tech University; Robert E. Settlage, Virginia Tech University; Kent M. Reed, University of Minnesota; Rami A. Dalloul, Virginia Tech

Using RNA-Seq to Characterize Brain Development in the Maturing Domesticated Turkey
Sungwon Kim, Virginia Tech University; Robert E. Settlage, Virginia Tech University; Kent M. Reed, University of Minnesota; Rami A. Dalloul, Virginia Tech

Reference Genes Standardization for RT-qPCR of Abalone Tissues
Edgar A. Lopez-Landavery, CICESE; Amelia Portillo-López, University of Baja California; Cristian Gallardo, Universidad de Concepcion; Miguel A. del Rio Portilla, CICESE

Genomic Characterization of the Germline Marker vasa in a Species that Undergoes Programmed Genome Rearrangement
Sarah E. Whelan, University of Kentucky; Jeramiah Smith, University of Kentucky

Analysis of Pluripotency Genes in Spinal Cord Regeneration of the Sea Lamprey (Petromyzon marinus)
Stephanie A Bryant, University of Kentucky; Jeramiah Smith, University of Kentucky

Genome-Wide Identification of Hsp40 in Channel Catfish and Their Involvement in Disease Defense Response
Lin Song, The Fish Molecular Genetics and Biotechnology Laboratory; Jiaren Zhang, The Fish Molecular Genetics and Biotechnology Laboratory; Chao Li, Auburn University; The Fish Molecular Genetics and Biotechnology Laboratory; Yun Li, Auburn University; The Fish Molecular Genetics and Biotechnology Laboratory; Luyang Sun, Auburn University; The Fish Molecular Genetics and Biotechnology Laboratory; John Liu, Auburn University

An Investigation into the Transcriptomics of Macroalgal Blooms
John David Swanson, Salve Regina University; Shennel Gelin, Salve Regina University; Noe B. Mercado, Salve Regina University; Tania Aires, University of Rhode Island; Carol Thornber, University of Rhode Island

Bac-D’s Effect on Intestinal Gene Expression and Exterior Bacterial Load of Eggs
Zachary S. Lowman, North Carolina State University; Chris Ashwell, North Carolina State University

Experimental Annotation of Post-Translationally Modified Proteins in Chicken
Bindu Nanduri, College of Veterinary Medicine, Mississippi State University; Richard H Bailey, Mississippi State University; Mariola J Edelmann, Mississippi State University

Impacts of Bisphenol A on Locomotion Behaviors, Growth, and Reproduction in Caenorhabditis elegans
Li Qiu, Northwest A&F University; Zailene Flood, East Carolina University; Yanqiong Zhang, East Carolina University; Xiaoping Pan, East Carolina University; Baohong Zhang, East Carolina University

Expression and Characterization of a Mitochondrial Gene orf216 from the CMS-Honglian Rice Expressed by Pichia pastoris Yeast
Yanping Tan, South-Central University for Nationalities; Gang Cheng, South-Central University for Nationalities; Xin Xu, South-Central University for Nationalities; Han Chen, South-Central University for Nationalities; Ruijing Guo, South-Central University for Nationalities; Chuntai Wang, South-Central University for Nationalities; Xingqiong Liu, South-Central University for Nationalities; Xuequn Liu, South-Central University for Nationalities

Resolution of Whole-Genome Duplications in Paramecium Species
Thomas Doak, National Center for Genome Analysis Support; Casey McGrath, Department of Biology, Indiana University; Michael Lynch, Department of Biology, Indiana University; Jean-Francois Pierre Gout, Department of Biology, Indiana University

Coffee (Coffea arabica) Molecular Resistance Responses to the Root-Knot Nematode Meloidogyne incognita
Erika V S Albuquerque, Embrapa; Joseane Padilha, Embrapa; Sergio Alencar, Universidade Catolica de Brasilia; Regina M. D. G. Carneiro, Embrapa Recursos Geneticos e Biotecnologia; Gerogios Pappas, Universidade de Brasilia; Anne-Sophie Petitot, Institut de Recherche pour le Développement; Anne-Claire Lecouls, Institut de Recherche Pour le Developement; Rodrigo R. Fragoso, Embrapa Cerrados; Maria Fatima Grossi de Sa, Embrapa Genetic Resources and Biotechnology; Diana Fernandez, Institut de Recherche pour le Développement

Replacement of Antibiotic Growth Promoter by Probiotic in the Diet Increases Intestinal Peptide Transporter RNA Expression in Broilers
Miguel Frederico Fernandez Alarcon, UNESP / FCAV; Daniel Mendes Borges Campos, UNESP / FCAV; Fernando Augusto de Souza, UNESP / FCAV; Gustavo Squassoni, UNESP / FCAV; Gabriela Gomes Freitas, UNESP / FCAV; Renato Luis Furlan, UNESP / FCAV; Luiz Roberto Furlan, UNESP / FCAV

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