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Genome Mapping, Tagging & Characterization: Cattle

Date: Monday, January 13, 2014
Time: 7:00 AM-10:00 PM
Room: Grand Exhibit Hall
The Genome of Bos indicus (Hariana) Popularly Known as Holy Cow
Rajinder S. Ranu, colorado state.university

The Canadian Cattle Genome Project
Mary A. De Pauw, University of Alberta; Paul Stothard, University of Alberta; Stephen P Miller, CGIL, University of Guelph; Stephen Moore, University of Queensland; Graham S Plastow, University of Alberta; Flavio Schenkel, Centre for the Genetic Improvement of Livestock, Department of Animal Biosciences, University of Guelph; John Basarab, Lacombe Research Centre; Ellen Goddard, University of Alberta; Xiaoping Liao, University of Alberta; John Crowley, University of Alberta; Katarzyna Stachowicz, AbacusBio Limited; Honghao Li, CGIL, University of Guelph; Mehdi Sargolzaei, Semex Alliance; Duc Lu, University of Alberta

Toward the Construction of an Accurate Reference Sequence for the Domestic Cow (Bos taurus) Genome Using Single Molecule Analysis
Shiguo Zhou, University of Wisconsin-Madison; Steve Goldstein, University of Wisconsin-Madison; Mike Place, University of Wisconsin-Madison; Mike Bechner, University of Wisconsin-Madison; Louise Pape, University of Wisconsin-Madison; Juan F. Medrano, University of California-Davis; David C. Schwartz, University of Wisconsin-Madison

Male Fertility Evaluation with a Custom-Made 384-SNP Chip in Cattle
Wansheng Liu, Department of Animal Science, Penn State University; Xiangpeng Yue, Dept. of Animal Science, Penn State University; Ti-Cheng Chang, Dept. of Animal Science, Penn State University; Kari Beth Krieger, Genex Inc.,

Monitoring Novel Functional Elements in the Bovine Genome Applying RNAseq
Christa Kuehn, Leibniz Institute for Farm Animal Biology (FBN); Wiebke Demasius, Leibniz Institute for Farm Animal Biology (FBN); Frieder Hadlich, Leibniz Institute for Farm Animal Biology (FBN); Rosemarie Weikard, Leibniz Institute for Farm Animal Biology (FBN)

Maximising the Rate of Genetic Gain in Cattle through Embryonic Genotyping
Christine Couldrey, AgResearch Limited; Dianne Hyndman, AgResearch Limited; Benoit Auvray, Invermay Agricultural Centre, AgResearch Ltd; Paul J. Fisher, AgResearch Limited; Fleur.C. Oback, AgResearch Limited; David N Wells, AgResearch Limited

To What Extent Does DNA Methylation Affect Phenotypic Variation in Cattle?
Stephanie McKay, University of Vermont; Jae Woo Kim, University of Missouri; Richard Chapple, Baylor College of Medicine; Robert D. Schnabel, Division of Animal Sciences, University of Missouri; Darren E. Hagen, Division of Animal Sciences, University of Missouri; Kevin Wells, University of Missouri; Derek Bickhart, Animal Genomics and Improvement Laboratory, ARS-USDA; James Koltes, Department of Animal Science, Iowa State University; James M. Reecy, Iowa State University; Jeremy F. Taylor, Division of Animal Sciences, University of Missouri; Kristen Taylor, University of Missouri

Genetic Study of NK-Lysin in Cattle
Junfeng Chen, Texas A&M University; Mi Ok Lee, Texas A&M University; James Womack, Texas A&M University

Population Structure of Ten US Beef Cattle Revealed By Principal Components Analysis on Genomic Data
Hailin Su, Department of Animal Science, Iowa State University; Jungjae Lee, Department of Animal Science, Iowa State University; Mahdi Saatchi, Department of Animal Science, Iowa State University - American Simmental Association; Rohan L. Fernando, Iowa State University; Dorian J. Garrick, Department of Animal Science, Iowa State University

Effect of SNP Quality Control LEVEL on Genomic Estimation of Relationships
Marina Duran-Aguilar, Universidad Nacional Autonoma de Mexico

Gene Set Enrichment Analysis of Bovine Respiratory Disease SNP Genotypic Data
Andrzej Wojtowicz, Washington State University; Christopher M. Seabury, Texas A&M University; Jeremy F. Taylor, Division of Animal Sciences, University of Missouri; Holly Neibergs, Washington State University

GWAS for Differential Manifestation of Clinical Signs and Symptoms Related to Bovine Respiratory Disease Complex in Holstein Calves
Christopher M. Seabury, Texas A&M University; Holly Neibergs, Washington State University; Jeremy F. Taylor, Division of Animal Sciences, University of Missouri; James Womack, Texas A&M University; Brd Consortium, Multi-Institutional-BRDcomplex.org

Increasing Accuracy of Genomic Predictions for Economically Important Traits in Dairy Cattle
Shadi Nayeri, University of Alberta; Mohammed K. Abo-Ismail, CGIL, University of Guelph; Daniela A. Grossi, CGIL, University of Guelph; Stephen P Miller, CGIL, University of Guelph; Micheal Dyck, University of Alberta; Stephen Moore, University of Queensland; Flavio Schenkel, Centre for the Genetic Improvement of Livestock, Department of Animal Biosciences, University of Guelph; Mehdi Sargolzaei, Semex Alliance; Paul Stothard, University of Alberta

Utilising Next Generation Sequencing Data to Fine-Map Milk Production QTL on Bos taurus Autosome 29
Catriona A. Millen, University of Melbourne; Hans D. Daetwyler, Department of Environment & Primary Industries; Amanda J. Chamberlain, Department of Environment & Primary Industries; Josquin F.G. Tibbits, Department of Environment & Primary Industries; Kathryn M. Guthridge, Department of Environment & Primary Industries; Ben J. Hayes, Department of Environment & Primary Industries; Mike E. Goddard, Department of Economic Development, Jobs, Transport and Resources

Genome-Wide Association (GWAS) Analysis of Bovine Milk Fatty Acids of Canadian Holstein Cows Using Genotyping-By-Sequencing (GBS) Markers
Eveline M. Ibeagha-Awemu, Dairy and Swine Research and Development Centre, Agriculture and Agri-Food Canada; Kingsley A. Akwanji, McGill University; Sunday O. Peters, Berry College; Ikhide G. Imumorin, Int'l Prog College of Agric & Life Sci Cornell Univ; Xin Zhao, McGill University

Effects of Lactation Stress on Maternal Immune Response in Dairy Cows during Early Stages of Pregnancy
Daniela Iamartino, PTP Science Park; Nadia Fiandanese, Parco Tecnologico Padano; Stefano Biffani, Parco Tecnologico Padano; Ezequiel Luis Nicolazzi, Parco Tecnologico Padano; Paola Ramelli, Parco Tecnologico Padano; Niamh Forde, University College of Dublin; Patrick Lonergan, University College of Dublin; John Williams, PTP Science Park

Genome Wide Association Analysis on Imputed High Density SNP Genotypes in the Italian and Swiss Brown Swiss Dairy Cattle Population for Milk Somatic Cell Count
Marlies A. Dolezal, Università degli Studi di Milano; Birgit Gredler, Qualitas AG; Attilio Rossoni, ANARB - Associazione Nazionale Allevatori di Razza Bruna; Franz R. Seefried, Qualitas AG; Fausta Schiavini, Università degli Studi di Milano; Maria Strillacci, Università degli Studi di Milano; Hossein Jorjani, Interbull Centre; Enrico Santus, ANARB - Associazione Nazionale Allevatori di Razza Bruna; Alessandro Bagnato, Università degli Studi di Milano

Multiple Breed Validation of Five QTL Affecting Mastitis Resistance
Johanna Vilkki, MTT Agrifood Research Finland; Marlies A. Dolezal, Università degli Studi di Milano; Goutam Sahana, Aarhus University; Terhi Iso-Touru, MTT Agrifood Research Finland; Frank Panitz, Aarhus University; Mario Fasold, University of Leipzig; Alessandro Bagnato, Dept. VESPA, Università degli Studi di Milano; Morris Soller, Hebrew University of Jerusalem

A SNP in Intron 8 of CD46 Produces a Novel Mastitis-Associated Transcript in Holsteins
Xiuge Wang, Shandong Academy of Agricultural Sciences; Jifeng Zhong, Shandong Academy of Agricultural Sciences; Zhihua Ju, Shandong Academy of Agricultural Sciences; Yundong Gao, Shandong Academy of Agricultural Sciences; Jinming Huang, University of Missouri-Columbia

Location of the Larger Linkage Disequilibrium Blocks in the Mexican and North American Holstein Cattle
Felipe de J. Ruiz, Centro Nal. de Inv. en Fis. y Mej. Animal INIFAP; Adriana García, INIFAP; Curtis P. VanTassell, Animal Genomics and Improvement Laboratory, USDA-ARS; Hugo H. Montaldo, Universidad Nacional Autonoma de Mexico

Genome-Wide Association Study and Differential Expression Analysis of Feed Efficiency using HD SNP Genotyping and Multiple Tissue RNAseq
Kristina L. Weber, UC Davis; Gonzalo Rincon, Zoetis; Alison Van Eenennaam, University of California, Davis

Genomic Approaches to Left-Sided Abomasal Displacement in Italian Holstein Cattle: Results from a Comprehensive Research Project
Stefano Biffani, IBBA-CNR National Research Council; Valentina Locatelli, VESPA - University of Milan; Ezequiel Luis Nicolazzi, Parco Tecnologico Padano; Filippo Biscarini, FPTP; Alessandra Stella, PTP Science Park

Transcriptomics of High Altitude Disease in Holstein Calves
Angela Cánovas, University of California-Davis; Alma Islas-Trejo, University of California-Davis; Kurt Stenmark, University of Colorado-Denver; Dale Brown, University of Colorado-Denver; Milton Thomas, Colorado State University; Rebecca Cockrum, Colorado State University; Juan F. Medrano, University of California-Davis

CNVs of Two Y-Linked Genes, HSFY and ZNF280BY, in Cattle and Their Association with Male Fertility in Holstein Sires
Xiangpeng Yue, Dept. of Animal Science, Penn State University; Chad Dechow, Dept. of Animal Science, Penn State University; Ti-Cheng Chang, Dept. of Animal Science, Penn State University; James Melton DeJarnette, Select Sires Inc.,; Clifton Eugene Marshall, Select Sires Inc.,; Wansheng Liu, Department of Animal Science, Penn State University

Comparative Studies of Horned/Polled in Beef and Dairy Cattles
Jiansheng Qiu, GeneSeek, Inc.; Barry Simpson, GeneSeek, Inc.; Stewart Bauck, Neogen/GeneSeek

Pooled Genotyping from Un-Pedigreed Beef Cows in Tropical Environments of Australia
Antonio Reverter, CSIRO Animal, Food and Health Sciences; John Henshall, CSIRO Animal, Food and Health Sciences; Shinji Sazasaki, Kobe University; Russell McCulloch, CSIRO Animal, Food and Health Sciences; Dom Niemeyer, CSIRO Animal, Food and Health Sciences; Sigrid A. Lehnert, CSIRO Agriculture Flagship

Effect of Varying Dietary Vitamin A Supplementation Levels in Combination with ADH1C Genotype on Intramuscular Fat Deposition in Finishing Beef Steers
Kristin G Krone, University of Saskatchewan; Alison K Ward, University of Saskatchewan; Kayla A Madder, University of Saskatchewan; Steve T Hendrick, Western College of Veterinary Medicine; John J McKinnon, University of Saskatchewan; Fiona C Buchanan, University of Saskatchewan

A Genome-Wide Survey Reveals a Deletion Polymorphism Associated with Resistance to Gastrointestinal Nematodes in Angus Cattle
Lingyang Xu, University of Maryland; Yali Hou, Chinese Academy of Sciences; Derek Bickhart, Animal Genomics and Improvement Laboratory, ARS-USDA; Jiuzhou Song, University of Maryland; Curtis P. VanTassell, Animal Genomics and Improvement Laboratory, USDA-ARS; Tad S. Sonstegard, Animal Genomics and Improvement Laboratory, USDA-ARS; George Liu, Animal Genomics and Improvement Laboratory, ARS-USDA

Detection of Copy Number Variations in Nelore Beef Cattle with High-Density SNP Genotyping Data
Joaquim Manoel Silva, Universidade do Estado de Mato Grosso; Poliana F Giachetto, Embrapa Informática Agropecuária; Luiz Otavio Campos da Silva, Embrapa Gado de Corte; Samuel Rezende Paiva, Embrapa Labex US – Secretariat of International Affairs; Alexandre R. Caetano, Embrapa Recursos Genéticos e Biotecnologia; Michel E Beleza Yamagishi, Embrapa Informática Agropecuária

De Novo Assembly of a Nelore (Bos indicus) Bull Genome Based on Short Read Sequences
Leandro C. Cintra, Embrapa Informática Agropecuária; Adhemar Zerlotini, Embrapa Informática Agropecuária; Francisco P. Lobo, Embrapa Informática Agropecuária; Felipe Rodrigues da Silva, Embrapa Informática Agropecuária; Poliana F Giachetto, Embrapa Informática Agropecuária; Paula R. Kuser-Falcao, Embrapa Agriculture Informatics; Luiz Otavio Campos da Silva, Embrapa Gado de Corte; Andrea Alves do Egito, Embrapa Gado de Corte; Fabiane Siqueira, Embrapa Gado de Corte; Naiara Milagres Augusto da Silva, Embrapa Recursos Genéticos e Biotecnologia; Samuel Rezende Paiva, Embrapa Labex US – Secretariat of International Affairs; Michel E Beleza Yamagishi, Embrapa Informática Agropecuária; Alexandre R. Caetano, Embrapa Recursos Genéticos e Biotecnologia

Accuracies of Genomic Breeding Values for Carcass Traits in Korean Hanwoo Cattle
Jungjae Lee, Department of Animal Science, Iowa State University; Hailin Su, Department of Animal Science, Iowa State University; Mahdi Saatchi, Department of Animal Science, Iowa State University - American Simmental Association; Dorian J. Garrick, Department of Animal Science, Iowa State University

Massively Parallel Sequencing of Korean Brindle Cattle to Discover Genome-Wide SNPs and Indels
Sung-Jin Lee, Kangwon National University; Jung-Woo Choi, University of Guelph; Xiaoping Liao, University of Alberta; Sairom Park, Kangwon National University; Paul Stothard, Department of Agricultural, Food and Nutritional Science, University of Alberta; Hak-Kyo Lee, Hankyong National University; Jeong-Koo Lee, Kangwon National University; Kyung-Tai Lee, National Institute of Animal Science, RDA; Namshin Kim, Personalized Genomic Medicine Research Center, KRIBB; Tae-Hun Kim, National Institute of Animal Science, RDA; Won-Hyong Chung, Korean Bioinformation Center, KRIBB; Heoyn-Jeong Jeon, National Institute of Animal Science

Population Structure of Ugandan Taurine and Zebuine Cattle Breeds as Revealed by Medium and High Density SNP Chips
Licia Colli, Inst. of Zootechnics, Università Cattolica del S. Cuore; Lorenzo Bomba, Inst. of Zootechnics, Università Cattolica del S. Cuore; Marco Milanesi, Inst. of Zootechnics, Università Cattolica del S. Cuore; Riccardo Negrini, AIA - Italian Breeders Association; Elisa Eufemi, Inst. of Zootechnics, Università Cattolica del S. Cuore; Stefano Capomaccio, Inst. of Zootechnics, Università Cattolica del S. Cuore; Raffaele Mazza, AIA - Italian Breeders Association; Alessandra Stella, PTP Science Park; Stephane Joost, EPFL École polytechnique fédérale de Lausanne; Sylvie Stucki, EPFL; Pierre Taberlet, LECA - CNRS - Université de Grenoble 1; François Pompanon, LECA - CNRS - Université de Grenoble 1; Fred Kabi, Makerere University; Vincent Muwanika, Makerere University; Charles Masembe, Makerere University; Paolo Ajmone Marsan, Inst. of Zootechnics, Università Cattolica del S. Cuore; The NEXTGEN Consortium, EU funded project, http://nextgen.epfl.ch

Population Structure Analysis of Indigenous Cattle Breeds of Pakistan
Hamid Mustafa, University of Veterinary and Animal Sciences

Whole-Genome Sequencing of Guzerá Breed Revealed SNPs with Potential Implication for Milk Production
Izinara Rosse Cruz, Federal University of Minas Gerais; Juliana A Geraldo, Center for Excellence in Bioinformatics – FIOCRUZ-MG; Francislon S. Oliveira, Center for Excellent in Bioinformatics - FIOCRUZ-Minas; Laura Rabelo Leite, Fundacao Oswaldo Cruz - CEBio; Flávio Araújo, Genomics and Computational Biology Group - FIOCRUZ-MG; Adhemar Zerlotini, EMBRAPA Informática Agropecuária - SP; Beatriz C. Lopes, EPAMIG-MG; Wagner A. Arbex, EMBRAPA Dairy Cattle – MG; Marco Antonio Machado, Embrapa Dairy Cattle Research Center; Maria Gabriela C.D. Peixoto, EMBRAPA Dairy Cattle – MG; Rui S. Verneque, EMBRAPA Dairy Cattle – MG; Marta F.M. Guimarães, EMBRAPA Dairy Cattle – MG; Marcos Vinicius G.B. Silva, EMBRAPA Dairy Cattle – MG; Roney S. Coimbra, Biosystems Informatics - FIOCRUZ-Minas; Maria Raquel S. Carvalho, Federal University of Minas Gerais; Guilherme Oliveira, Fundacao Oswaldo Cruz - CEBio

Candidate Causative Mutation on BTA18 Associated with Calving and Conformation Traits in Holstein Bulls
John B. Cole, Animal Genomics and Improvement Laboratory, ARS-USDA; Jana L Hutchison, Animal Genomics and Improvement Laboratory, ARS-USDA; Daniel J. Null, Animal Genomics and Improvement Laboratory, ARS-USDA; Paul M. VanRaden, Animal Genomics and Improvement Laboratory, ARS-USDA; George Liu, Animal Genomics and Improvement Laboratory, ARS-USDA; Steven G. Schroeder, Animal Genomics and Improvement Laboratory, USDA-ARS; Tad S. Sonstegard, Animal Genomics and Improvement Laboratory, USDA-ARS; Curtis P. VanTassell, Animal Genomics and Improvement Laboratory, USDA-ARS; Derek Bickhart, Animal Genomics and Improvement Laboratory, ARS-USDA

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