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Genome Mapping, Tagging & Characterization: Maize, Sorghum, Millet, Sugar Cane, and related

Date: Monday, January 13, 2014
Time: 7:00 AM-10:00 PM
Room: Grand Exhibit Hall
Maize Genotyping Using Rapid-Seq (Randomly-Amplified Polymorphic DNA Sequencing)
Matias Kirst, University of Florida; Marcio F Resende Jr., University of Florida; Srikar Chamala, University of Florida; Leandro G Neves, RAPiD Genomics LLC

Genomic Prediction Accuracy in CIMMYT's East African Maize Breeding Program
Vahid Edriss, Cornell University; McDonald B. Jumbo, CIMMYT; Dan Makumbi, CIMMYT; Kassa Semagn, CIMMYT; Xuecai Zhang, CIMMYT; Jose Crossa, CIMMYT; Michael S. Olsen, CIMMYT; Mark E Sorrells, Cornell University; Jean-Luc Jannink, USDA, Cornell University

Maize Shoot Apical Meristem Architecture:  Natural Diversity and Its Genetic Control
Addie M. Thompson, University of Minnesota; Lin Li, University of Minnesota; James E. Crants, University of Minnesota; Nathan M. Springer, University of Minnesota; Patrick S. Schnable, Iowa State University; Marja Timmermans, Cold Spring Harbor Laboratory; Jianming Yu, Iowa State University; Michael Scanlon, Cornell University; Gary Muehlbauer, University of Minnesota

Genetic Architecture Controlling Flowering Time Variation in Exotic Derived Doubled Haploid Maize Lines
Adam E. Vanous, Iowa State University; Thomas Lubberstedt, Iowa State University; Michael Blanco, USDA-ARS and Iowa State University, Ames, IA; Sherry Flint-Garcia, USDA-ARS and University of Missouri, Columbia, MO; Martin Bohn, University of Illinois, Urbana, IL; Jode Edwards, USDA-ARS and Iowa State University, Ames, IA; Dan Nettleton, Department of Statistics, Iowa State University; Mark Millard, USDA-ARS and Iowa State University, Ames, IA; Darlene Sanchez, Iowa State University, Ames, IA; M. Cinta Romay, Institute for Genomic Diversity, Cornell University; Edward S. Buckler, Institute for Genomic Diversity, Cornell University; Candice Gardner, USDA-ARS and Iowa State University

QTL Meta-Analysis for Flowering Time and Yield in Maize
José M. Soriano Soriano, DipSA - University of Bologna; Ana K. Martinez Ascanio, DipSA - University of Bologna; Rachil Koumproglou, Semillas Fito; Torben Jahrmann, Semillas Fito; Roberto Tuberosa, DipSA - University of Bologna; Silvio Salvi, DipSA - University of Bologna

Studying the Pattern of Recurrent Intron Loss in an Important Height-Reducing Gene, ABCB1
Rajiv Krishna Parvathaneni, University of Georgia; Katrien M. Devos, Institute of Plant Breeding, Genetics and Genomics (Dept. of Crop and Soil Sciences), and Dept. of Plant Biology, University of Georgia; Victoria Lynn DeLeo, University of Georgia

Complementation Contributes to Transcriptome Complexity in Maize (Zea mays L.) Hybrids Relative to Their Inbred Parents
Anja Paschold, University Bonn; Nick B. Larson, Iowa State University; Caroline Marcon, INRES Crop Functional Genomics, University of Bonn; James C. Schnable, Donald Danforth Plant Science Center; Cheng-Ting Yeh, Iowa State University; Christa Lanz, Max-Planck-Institute for Developmental Biology; Dan Nettleton, Department of Statistics, Iowa State University; Hans-Peter Piepho, University of Hohenheim; Patrick S. Schnable, Iowa State University; Frank Hochholdinger, University Bonn

Intraspecific Variation of Recombination Rate in Maize
Matthieu Falque, INRA/CNRS/Univ Paris-Sud/AgroParisTech; Eva Bauer, Technische Universitaet Muenchen; Thomas Altmann, IPK; Pascal Flament, Limagrain; Albrecht E. Melchinger, Universität Hohenheim; Milena Ouzunova, KWS SAAT AG; Alain Charcosset, INRA/CNRS/Univ Paris-Sud/AgroParisTech; Pedro Revilla, Misión Biológica de Galicia (CSIC); Jesus Moreno-Gonzales, Centro Investigacións Agrarias Mabegondo (CIAM); Olivier C. Martin, INRA/CNRS/Univ Paris-Sud/AgroParisTech; Chris-Carolin Schön, Technische Universitaet Muenchen

Heat Tolerance of Maize - Improving the Tolerance By Next Generation Plant Science
Felix Frey, Max Planck Institute for Plant Breeding Research; Claude Urbany, Max Planck Institute for Plant Breeding Research; Bruno Huettel, Max Planck Genome Centre; Richard Reinhardt, Max Planck Genome Centre; Benjamin Stich, Max Planck Institute for Plant Breeding Research

Sites of Ozone Sensitivity in Diverse Maize Inbred Lines
Elizabeth A. Ainsworth, USDA ARS; Patrick J. Brown, University of Illinois, Urbana-Champaign; Andrew D.B. Leakey, University of Illinois at Urbana-Champaign; Lauren M. McIntyre, University of Florida; Ilse Barrios-Perez, University of Illinois, Urbana-Champaign; Brad Dalsing, University of Illinois at Urbana-Champaign; Gorka Erice, University of Illinois, Urbana-Champaign; Courtney Leisner, University of Illinois at Urbana-Champaign; Christopher Montes, University of Illinois at Urbana-Champaign; Alison Morse, University of Florida; Lorena Rios-Acosta, University of Illinois at Urbana-Champaign; Sang-In Shim, Gyeongsang National University; Crystal A. Sorgini, University of Illinois, Urbana-Champaign; Craig Yendrek, University of Illinois at Urbana-Champaign

Comparative Analysis of Six Maize Plastid Genomes
Massimo Bosacchi, Rutgers University

Inheritance and Molecular Mapping of Anthracnose Resistant Gene Present in Differential Line PI533918
Hugo E. Cuevas, ARS - Tropical Agriculture Research Station; Louis K Prom, USDA-ARS; John E Erpelding, USDA-ARS; Giseiry Rosa, USDA-ARS

Variation in Virulence of Goss’s Bacterial Wilt and Blight Pathogen Clavibacter michiganensis subsp. nebraskensis Strains in the Maize Inbred Lines
Amritpal Singh, University of Nebraska-Lincoln; Aaron Lorenz, University of Nebraska–Lincoln; Tamra Jackson, University of Nebraska

Identification of Molecular Markers for Barley Yellow Dwarf Virus Resistance in Maize By Genome Wide Association Study
Frederike Horn, Max Planck Institute for Plant Breeding Research; Antje Habekuss, Julius Kühn-Institute (JKI); Benjamin Stich, Max Planck Institute for Plant Breeding Research

QTL Mapping of Quantitative and Qualitative Measures of Resistance to Fusarium Ear Rot in Maize
Laura Morales, Cornell University; Charles T. Zila, North Carolina State University; James B. Holland, North Carolina State University; Rebecca J. Nelson, Cornell University

Heterosis and Genetic Load Investigated in a Partial Diallel Cross
Sofiane Mezmouk, University of California Davis; Rita H. Mumm, Illinois Plant Breeding Center; Jeffrey Ross-Ibarra, University of California

Mapping in Sorghum Using Genotyping-By-Sequencing
Carrie S. Thurber, University of Illinois Urbana-Champaign; Race H. Higgins, University of Illinois Urbana-Champaign; Elizabeth M. Hawkins, University of Illinois Urbana-Champaign; Payne S. Burks, University of Illinois Urbana-Champaign; Patrick J. Brown, University of Illinois, Urbana-Champaign

Genetic Basis of Stem Growth in Sorghum
Josie L. Hilley, Texas A&M University; Sandra Truong, Texas A&M University; Ryan McCormick, Texas A&M University; Daryl Morishige, Texas A&M University; William L. Rooney, Texas A&M University; Patricia Klein, Texas A&M University; John E. Mullet, Texas A&M University

Genetic Analysis of Sorghum Allelopathy
Tariq Shehzad, University of Tsukuba; Kazutoshi Okuno, University of Tsukuba

Improving Phosphorus Efficiency in Sorghum by the Identification and Validation of Sorghum Homologs for Pstol1, a Rice Gene Responsible for a Major Phosphorous Uptake QTL (Pup1)
Barbara Hufnagel, Embrapa Maize and Sorghum / Cornell; Leon Kochian, Robert W. Holley Center, USDA-ARS & Cornell University; Gabriel C. Azevedo, Embrapa Maize and Sorghum; Claudia T. Guimaraes, Embrapa Maize and Sorghum; Sylvia M. Sousa, Embrapa Maize and Sorghum; Robert E. Schaffert, Embrapa Maize and Sorghum; Lidianne Assis, Embrapa Maize and Sorghum; Barbara Negri, Embrapa Maize and Sorghum; Willmar Leiser, ICRISAT; Eva Weltzien, ICRISAT; Fred Rattunde, ICRISAT; Joao H. Viana, Embrapa Maize and Sorghum; Antônio Augusto Franco Garcia, University of São Paulo (ESALQ/USP); Rodrigo Gazaffi, Luiz de Queiroz College of Agriculture, ESALQ; Matthias Wissuwa, Japan International Center for Agricultural Sciences; Sigrid Heuer, The International Rice Research Institute; Jurandir V. Magalhaes, Embrapa Maize and Sorghum

A Global View of Sugarcane Transcriptome Mapped in Sorghum Genome
Claudio B. C. Silva, University of Campinas; Estela A. Costa, University of Campinas; Melina C. Mancini, University of Campinas - UNICAMP; Luciana R. Pinto, Centro de Cana, Instituto Agronômico; Monalisa S. Carneiro, Centro de Ciências Agrárias, Federal University of São Carlos; Anete P. Souza, University of Campinas; Renato Vicentini, Universidade Estadual de Campinas (UNICAMP)

Allelic Divergence in Sugarcane Cultivars Revealed through Capillary Electrophoregrams of Fluorescence-Labeled Microsatellite Markers
Amaresh Chandra, USDA-ARS, SEA, SRU, Houma, LA 70360, USA; Michael P. Grisham, USDA-ARS, SEA, SRU, Houma, LA 70360, USA; Yong-Bao Pan, USDA-ARS, SEA, SRU, Houma, LA 70360, USA

Genetic Mapping of Molecular Markers Related to Fiber Production in Sugarcane
Karine Kettener, University of São Paulo State-UNESP; Karine M. Oliveira, CTC Sugarcane Technology Center; Sabrina M. Chabregas, CTC Sugarcane Technology Center; Jorge A. Da Silva, Texas A&M Agrilife Research; Celso Luis Marino, UNESP

Molecular Markers Associated with Brown Rust Resistance in a Sugarcane Bi-Parental Cross
Melina C. Mancini, University of Campinas - UNICAMP; Danilo A. Sforça, University of Campinas - UNICAMP; Carina O. Anoni, University of São Paulo; Estela A. Costa, University of Campinas; Claudio B. C. Silva, University of Campinas; Thiago W. A. Balsalobre, University of Campinas; Monalisa S. Carneiro, Centro de Ciências Agrárias, Federal University of São Carlos; Antonio A. F. Garcia, University of São Paulo; Anete P. Souza, University of Campinas

Developing a Reference Genomic Map and Identifying the Markers Linked to Sugarcane Orange Rust Resistance Genes
Xiping Yang, Agronomy Department, University of Florida; Neil Glynn, Syngenta Seeds, Inc.; Jack Comstock, Sugarcane Field Station, USDA, ARS,; Jianping Wang, Agronomy Department, University of Florida

de novo Assembly and Characterization of Leaf Transcriptome using Illumina Sequencing in Tropical Forage Panicum maximum
Guilherme Toledo Silva, University of Campinas; Claudio Benicio Cardoso- Silva, University of Campinas- UNICAMP; Liana Jank, Embrapa Beef Cattle; Anete Pereira de Souza, University of Campinas

The Development of Genetic Resources and Methods for Performing Crosses in Setaria viridis - A New Model System for the Grasses
Hui Jiang, Donald Danforth Plant Science Center; Barbier Hugues, Boyce Thompson Institute; Thomas P. Brutnell, Donald Danforth Plant Science Center

Developing Tools for Studying Roots in Setaria
Muh-ching Yee, Carnegie Institution for Science; Jose Sebastian, Carnegie Institution for Science; Jose Dinneny, Dept. of Plant Biology, Carnegie Institution for Science

Setaria viridis: A Monocot Root Model System
Jose Sebastian, Carnegie Institution for Science; Muh-Ching Yee, Carnegie Institution of Science; Jose Dinneny, Dept. of Plant Biology, Carnegie Institution for Science

Population Transcriptomic Landscape of Miscanthus Energy Crop Domestication
Qin Xu, Institute of Botany, the Chinese Academy of Sciences; Cai yun Zhu, Institute of Botany, the Chinese Academy of Sciences; Tao Sang, Institute of Botany, the Chinese Academy of Sciences

Haplotype Variation for Genes Involved in Biomass and Lignin Biosynthesis in Switchgrass
Bochra A. Bahri, University of Georgia / Agronomic Institute of Tunisia; Guillaume Daverdin, University of Georgia; Jan-Fang Cheng, DOE Joint Genome Institute; Kerrie W. Barry, DOE Joint Genome Institute; Katrien M. Devos, Institute of Plant Breeding, Genetics and Genomics (Dept. of Crop and Soil Sciences), and Dept. of Plant Biology, University of Georgia

Generation of a Switchgrass Consensus Map and Its Comparative Analysis with Foxtail Millet
Guillaume Daverdin, University of Georgia; Bochra A. Bahri, University of Georgia / Agronomic Institute of Tunisia; Desalegn Serba, The Samuel Roberts Noble Foundation; Malay C. Saha, The Samuel Roberts Noble Foundation; Christian Tobias, USDA-ARS, Western Regional Research Center; Katrien M. Devos, Institute of Plant Breeding, Genetics and Genomics (Dept. of Crop and Soil Sciences), and Dept. of Plant Biology, University of Georgia

Stability of Chromosomal Duplication in P. purpureum X P. glaucum Triploid Hybrids
Ana Luisa S. Azevedo, Embrapa; Juliane D. Nunes, Embrapa; Carolina S. Fonseca, Embrapa; Francisco Jose S. Ledo, Embrapa; Juarez C. Machado, Embrapa; Antonio Vander Pereira, Embrapa

Mapping Aflatoxin Accumulation Resistance Factors in Maize
Marilyn Warburton, USDA ARS Corn Host Plant Resistance Research Unit; Paul Williams, USDA ARS Corn Host Plant Resistance Research Unit; Juliet Tang, USDA ARS Corn Host Plant Resistance Research Unit; Gary Windham, USDA-ARS, Corn Host Plant Resistance Research Unit; Seth Murray, Texas A&M University; Wenwei Xu, Texas A&M University; Andy Perkins, Department of Computer Science and Engineering; Leigh Hawkins, USDA ARS CHPRRU

Testing the Hypothesis: Validating Association Mapping Findings for Northern Leaf Blight in Maize
Tiffany M. Jamann, Cornell University; Xingyu Luo, Cornell University; Rebecca J. Nelson, Cornell University

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