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Genome Mapping, Tagging & Characterization: Other Species

Date: Monday, January 13, 2014
Time: 7:00 AM-10:00 PM
Room: Grand Exhibit Hall
A Draft Genome Sequence of Tartary Buckwheat, Fagopyrum tataricum
Maria D. Logacheva, Moscow State University; Aleksey A. Penin, Lomonosov Moscow State University; Roman A Sutormin, Lomonosov Moscow State University; Natalia V Demidenko, Lomonosov Moscow State University; Sergey A. Naumenko, Lomonosov Moscow State University; Dmitry V. Vinogradov, Institute for Information Transmission Problems; Pavel V. Mazin, Institute for Information Transmission Problems; Yerbol Zh. Kurmangaliev, Institute for Information Transmission Problems; Mikhail S. Gelfand, Institute for Information Transmission Problems; Alexey S. Kondrashov, Lomonosov Moscow State University

High-Density Genetic Maps of Zoysiagrass (Zoysia japonica Steud.) Using RAD Markers
Fangfang Wang, Texas A&M AgriLife Research; Ratnesh Singh, Texas A&M University System, AgriLife Research; Ambika Chandra, Texas A&M AgriLife Research; Qingyi Yu, Texas A&M AgriLife Research

Identification and Expression Analysis of Anthocyanin Biosynthesis Genes in Zoysia japonica L
Jong Hwa Ahn, Department of plant science, SNU; Hye Yeon Soh, Department of plant science, SNU; Jin Hoe Huh, Seoul National University

Orange Is the New Yellow: Cracking the Genetic Code Controlling Carotenoid Accumulation in Carrot (Daucus carota L.)
Shelby L. Ellison, University of Wisconsin-Madison; Massimo Iorizzo, University of Wisconsin-Madison; Douglas A. Senalik, USDA-ARS; Philipp W. Simon, USDA-ARS and University of Wisconsin-Madison

High Genetic Diversity Within and Among Bitter Cassava Cultivated in Three Soil Types in Central Amazonia
Alessandro Alves Pereira, University of São Paulo; Maristerra Lemes, INPA - Instituto Nacional de Pesquisa da Amazônia; Nivaldo Peroni, Universidade Federal de Santa Catarina; Marcelo Mattos Cavallari, Embrapa - COCAIS; Charles Clement, INPA - Instituto Nacional de Pesquisa da Amazônia; Maria Imaculada Zucchi, APTA Regional Pólo Centro-Sul; José Baldin Pinheiro, Departamento de Genética/ESALQ/USP

Confined Field Trials of Transgenic Cassava in Puerto Rico: Tackling Malnourishment in Africa
Dimuth Siritunga, Uni. of Puerto Rico Mayaguez; Eliana Gaitan Solis, Donald Danforth Plant Science Center; Edgar B. Cahoon, University of Nebraska; Paul Anderson, Donald Danforth Plant Science Center

Genetic Structure of Natural Populations of Elionurus muticus and Citogenetic Characterization
Thanise N. Fuller, Universidade Federal do Rio Grande do Sul; Carolina Tessele, Universidade Federal do Rio Grande do Sul; Divanilde Guerra, Universidade Federal do Rio Grande do Sul; Maria Teresa Schifino-Wittmann, Universidade Federal do Rio Grande do Sul; Ingrid B. I. Barros, Universidade Federal do Rio Grande do Sul; Jose F Barbosa-Neto, Universidade Federal do Rio Grande do Sul

A Transcriptomic Approach to Understanding Polymorphic and Transcript Level Differences Linked to Isoquinoline Alkaloid Biosynthesis in Triploid Varieties of Narcissus pseudonarcissus
Jane A Pulman, University of Liverpool; Meriel Jones, University of Liverpool; Anthony Hall, University of Liverpool; James Hartwell, University of Liverpool

Genetic Architecture of Stability of Genetically Complex Traits in Lettuce
Youngsook You, Cal Poly Pomona; Danielle Ellis, Cal Poly Pomona; David W. Still, Cal Poly Pomona

Development of High-Density Intra-Specific Linkage Map Using Genotyping By Sequencing (GBS) in Lettuce
Carlos H. Galeano, Genome Center, University of California; Lutz Froenicke, Genome Center, University of California; Jorge A. Duitama Castellanos, International Center for Tropical Agriculture (CIAT); Alexander Kozik, Genome Center, University of California; Sebastian Reyes Chin-Wo, Genome Center, University of California; Ivan Simko, USDA-ARS; Ryan Hayes, USDA-ARS; Richard Michelmore, Genome Center, University of California

Effective Genome-Wide SNP Detection and Genotyping for Constructing a High-Dense Genetic Linkage Map of Watermelon (Citrullus ianatus (Thunb.) Matsum & Nakai )
Taiho Lee, Dept of Integrative Plant Science, Chung-Ang University; Chung-Sun Kim, Dept of Integrative Plant Science, Chung-Ang University; Bal-Kum Han, Dept of Integrative Plant Science, Chung-Ang University; Sun-Ju Rhee, Dept of Integrative Plant Science, Chung-Ang University; Yoon-Jeong Jang, Dept of Integrative Plant Science, Chung-Ang University; Gung-Pyo Lee, Dept of Integrative Plant Science, Chung-Ang University

Genome-Wide Characterization of Microsatellites in Cucumis hystrix and In Silico Identification of Polymorphic SSR Markers
Luming Yang, University of Wisconsin-Madison; Yiqun Weng, USDA ARS/ Universtiy of Wisconsin

Association of the Resistant Gene with Simple Sequence Repeat Markers to Meloidogyne incognita in Cucumis sativus-hystrix Introgression Line
Chunyan Cheng, Nanjing Agricultural University; Xuejiao Liu, Nanjing Agricultural University; Qunfeng Lou, Nanjing Agricultural University; Ji Li, Nanjing Agricultural University; Jinfeng Chen, Nanjing Agricultural University

Synthesis and Characterization of an Autoallopolyploid Between Allotetraploid and Autotetraploid in Cucumis
Li Jia, Nanjing Agricultural University; Li Cui, Nanjing Agricultural University; Qunfeng Lou, Nanjing Agricultural University; Ji Li, Nanjing Agricultural University; Jinfeng Chen, Nanjing Agricultural University

Fine Genetic Mapping of a Locus Controlling Short Internode Length in Melon (Cucumis melo L.)
Younghoon Park, Pusan National University; Juyeol Oh, 2Gyeongnam Agricultural Research & Extension Services; Juhyeon Kim, Gyeongsang National University; Jihyun Hwang, Pusan National University; Jack E. Staub, USDA-ARS Forage & Range Research lab; SangMin Chung, Dongguk University

Development of Genomic Resources for Guayule (Parthenium argentatum A. Gray)
Daniel Ilut, Cornell University; Paul L. Sanchez, USDA-ARS; Matthew A. Jenks, USDA-ARS; William R. Belknap, USDA, ARS, PWA, WRRC-CIU; Michael A. Gore, Cornell University

Disagreement Between Results Obtained from GWAS and Biparental QTL Mapping Suggests Epistatic Interaction
Shiori Yabe, The University of Tokyo; Takashi Hara, University of Tsukuba; Mariko Ueno, Kyoto University; Hiroyuki Enoki, TOYOTA MOTOR CORPORATION; Tatsuro Kimura, Future Project Division, TOYOTA MOTOR CORPORATION; Satoru Nishimura, Future Project Division, TOYOTA MOTOR CORPORATION; Yasuo Yasui, Kyoto University; Ryo Ohsawa, University of Tsukuba; Hiroyoshi Iwata, The University of Tokyo

Development of De Novo Reference Transcriptome Assembly and Large-Scale Identification of Simple Sequence Repeat Markers in Stevia rebaudiana
Veronica Vallejo, Michigan State University; Drew Fuller, Michigan State University; Kyle Brasier, Michigan State University; Ryan Warner, Michigan State University

Isolation of Dwarf Gene in Echinacea purpurea and Generation of Transgenic Plants Transformed with Dwarf RNA Interference Construct
Jin Zhao, Graduate School of Biotechnology, Kyung Hee University; Yuan Yuan Fu, Graduate School of Biotechnology, Kyung Hee University; Ji-Sun Lee, Dept. of Horticultural Biotech., Kyung Hee University; Jong-Hwa Park, Graduate School of Biotechnology, Kyung Hee University; Kong Young Park, URISEED Inc.; Geun-Won Choi, Dept. of Horticultural Biotech., Kyung Hee University; In Sik Chung, Graduate School of Biotechnology, Kyung Hee University; Youn-Hyung Lee, Dept. of Horticultural Biotech., Kyung Hee University

Development of Cross Compatible Near-Isogenic Lines Using Marker-Assisted Selection in Radish (Raphanus sativus L.)
Suhyoung Park, National Institute of Horticultural & Herbal Science; Moo-Kyoung Yoon, National Institute of Horticultural & Herbal Science; Jung-Ho Kwak, National Institute of Horticultural & Herbal Science; Dae-young Kim, National Institute of Horticultural & Herbal Science; Won Byoung Chae, National Institute of Horticultural & Herbal Science

Molecular Evaluation and Cytogenetic Effect of Spent Engine Oil in Lagos, Nigeria Using Allium cepa Assay and RAPD-PCR Technique
Khalid Olajide Adekoya, UNIVERSITY OF LAGOS; Victoria O Okolie, Mecure Health Care Limited; Liasu Adebayo Ogunkanmi, UNIVERSITY OF LAGOS; Bola O. Oboh, UNIVERSITY OF LAGOS

Comparative Sequencing of Two Species in Allium
Vratislav Peska, CEITEC, Masaryk University; Jiri Fajkus, CEITEC MU & Inst. of Biophysics, ASCR,v.v.i

Assessing the Genetic Diversity of a Core Set of Jatropha curcas Accessions By High-Density Sequence-Based DArT-Seq Genotyping
Alexandre Alonso Alves, Embrapa Agroenergy; Bruno Galvêas Laviola, Embrapa Agroenergy; Tatiana Barbosa Rosado, Universidade de Brasília; Dario Grattapaglia, EMBRAPA Genetic Resources and Biotechnology

Distribution of SNP Variation Within and Among Elite Familes of Jatropha curcas
Tatiana Barbosa Rosado, Universidade de Brasília; Bruno Galvêas Laviola, Embrapa Agroenergy; Alexandre Alonso Alves, Embrapa Agroenergy; Dario Grattapaglia, EMBRAPA Genetic Resources and Biotechnology

Breeding Jatropha By Genomic Selection: A Pilot Assessment of Accuracy of Predictive Models
Bruno Galvêas Laviola, Embrapa Agroenergy; Alexandre Alonso Alves, Embrapa Agroenergy; Tatiana Barbosa Rosado, Universidade de Brasília; Dario Grattapaglia, EMBRAPA Genetic Resources and Biotechnology; Leonardo Lopes Bhering, Universidade Federal de Viçosa

Genetic Structure of the Florida Key Tree Cactus, Pilosocereus robinii, Using Restriction Site Associated DNA (RAD) Markers
Eric von Wettberg, Florida International University; Tonya D Fotinos, Panola College; Joyce Maschinski, Fairchild Tropical Botanic Garden

Chloroplast Studies in Sagebrush
Mark Huynh, Brigham Young University; Justin T. Page, Brigham Young University; Josh Udall, Brigham Young University

Comparative Genomic Project of Arecaceae
Qiang Lin, Joint Center for Genomics Research, KACST & CAS; Wanfei Liu, Joint Center for Genomics Research, KACST & CAS; Burair Alsaihati, Joint Center for Genomics Research, KACST & CAS; Guangyu Zhang, Joint Center for Genomics Research, KACST & CAS; Xiaowei Zhang, Joint Center for Genomics Research, KACST & CAS; Songnian Hu, Joint Center for Genomics Research, KACST & CAS; Jun Yu, Joint Center for Genomics Research, KACST & CAS; Ibrahim S AlMssallem, Joint Center for Genomics Research, KACST & CAS

Cloning, Characterization, and Functional Analysis of LeMYB1 and Its Promoter in Lithospermum erythrorhizon
Yonghua Yang, Nanjing University; Hu Zhao, Nanjing University; Jiliang Qi, Nanjing University

Luminescence Studies of Nanoporous Germanium Doped Biosilica in Fresh Water Diatoms
Bhaben Tanti, Gauhati University; Shamsun Nahar, Department of Botany, Gauhati University

A Whole Genome Integrated Map for the Alpaca
Felipe Avila, Texas A&M University; Pranab Jyoti Das, Texas A&M University; Malorie P. Baily, Texas A&M University, College Station, TX; Polina Perelman, Institute of Molecular and Cellular Biology; Jan Janecka, Texas A&M University, College Station, TX; Renuka Chowdhary, Texas A&M University, College Station, TX; Elaine Owens, Texas A&M University; Michelle Kutzler, Department of Animal and Rangeland SciencesOregon State University; Andrew Merriwether, Binghamton University, Vestal, NY; Warren E Johnson, National Cancer Institute at Frederick, NIH; Terje Raudsepp, Texas A&M University

Expression and Immunogenic Analysis of Recombinant Capsid Protein VP1 for Developing Subunit Vaccine Against Hepatitis A Virus
Kyoungok Jang, Graduate School of Biotechnology, Kyung Hee University; Hyun Ho Lee, Graduate School of Biotechnology, Kyung Hee University; Jong-Hwa Park, Graduate School of Biotechnology, Kyung Hee University; Wonyong Kim, Dept. of Microbiology & RITSB, Chung-Ang University; Jong Bum Kim, Dept. of Agricultural Biotechnology, NAAS; In Sik Chung, Graduate School of Biotechnology, Kyung Hee University

Immunological Effect of Glycosylation-Modified Human Colorectal Cancer Antigen GA733-2 Produced from Nicotiana benthaminana Leaves
Yuan Yuan Fu, Graduate School of Biotechnology, Kyung Hee University; Hyun Ho Lee, Graduate School of Biotechnology, Kyung Hee University; Jong-Hwa Park, Graduate School of Biotechnology, Kyung Hee University; Ki Sung Ko, Dept. of Medicine, MRI, Chung-Ang University; Hyung Sik Kang, SBST, Chonnam National University; Young Hee Joung, SBST, Chonnam National University; In Sik Chung, Graduate School of Biotechnology, Kyung Hee University

Immunogenic Analysis of Plant-Derived Recombinant Hepatitis A Virus VP1-Fc in Sublingual-, Nasal-, and Oral-Immunized Mice
Yuan Yuan Fu, Graduate School of Biotechnology, Kyung Hee University; Hyun Ho Lee, Graduate School of Biotechnology, Kyung Hee University; Jong-Hwa Park, Graduate School of Biotechnology, Kyung Hee University; Wonyong Kim, Dept. of Microbiology & RITSB, Chung-Ang University; Jong Bum Kim, Dept. of Agricultural Biotechnology, NAAS; In Sik Chung, Graduate School of Biotechnology, Kyung Hee University

Development of Influenza Universal Vaccine Materials Using Antigenic M1 and M2 Extracellular Domain (M2e) of Influenza A/Korea/01-2-9/2009 (H1N1) Virus Expressed from Stably Transfected Trichoplusia ni BT1 Tn 5B1-4 Cells
Hyun Ho Lee, Graduate School of Biotechnology, Kyung Hee University; Geun Pyo Hong, Graduate School of Biotechnology, Kyung Hee University; Jong-Hwa Park, Graduate School of Biotechnology, Kyung Hee University; Dae Kyun Chung, RNA Inc.; Wonyong Kim, Dept. of Microbiology & RITSB, Chung-Ang University; In Sik Chung, Graduate School of Biotechnology, Kyung Hee University

Production of Influenza A/Korea/01-2-9/2009 (H1N1) Virus-like Particles from Stably Transfected Trichoplusia ni BT1 Tn 5B1-4 Cells
Geun Pyo Hong, Graduate School of Biotechnology, Kyung Hee University; Hyun Ho Lee, Graduate School of Biotechnology, Kyung Hee University; Jong-Hwa Park, Graduate School of Biotechnology, Kyung Hee University; Dae Kyun Chung, RNA Inc.; Wonyong Kim, Dept. of Microbiology & RITSB, Chung-Ang University; In Sik Chung, Graduate School of Biotechnology, Kyung Hee University

The Inhibitory Effect of Canstatin on VEGF-A Induced Lymphangiogenesis in an Oral Squamous Cell Carcinoma SCCVII Animal Model
Jeon Hwang-Bo, Graduate School of Biotechnology, Kyung Hee University; Jong-Hwa Park, Graduate School of Biotechnology, Kyung Hee University; In Sik Chung, Graduate School of Biotechnology, Kyung Hee University

Mining the Most Species-Rich Amniote Genus: de novo Sequencing of Three Anole Lizards for Comparative Genomic Analysis
Marc Tollis, Arizona State University; Elizabeth D. Hutchins, Arizona State University; Walter L. Eckalbar, Arizona State University; Michael R. Crusoe, Arizona State University; Catherine M. May, Arizona State University; Jessica Stapley, Smithsonian Tropical Research Institute; Elise Kulik, Arizona State University; Matt J. Huentelman, Translational Genomics Research Institute; Rebecca E. Fisher, University of Arizona; Kenro Kusumi, Arizona State University

Transcriptome Profiling of the Toadlet Brachycephalus garbeana (Amphibia: Anura: Brachycephalidae)
Prianda R Laborda, Universidade Estadual de Campinas (UNICAMP); Anete P Souza, University of Campinas - UNICAMP; Sérgio F Reis, Universidade Estadual de Campinas (UNICAMP)

Assembly and Annotation of the Etheostoma tallapoosae Genome
Leos G. Kral, University of West Georgia; Adrian Caciula, Georgia State University; Charly Blanche Temate, Georgia State University; Alexander Zelikovsky, Georgia State University

High Throughput Molecular Identification of Ruminant Gastrointestinal Nematodes
Livia Loiola dos Santos, Universidade Federal de Minas Gerais; Luciana Garcia Andrade, Universidade Federal de Minas Gerais; Ronaldo Luiz Nunes, Universidade Federal de Minas Gerais; Danielle Cunha Cardoso, Universidade Federal de Minas Gerais; Eduardo Bastianetto, Universidade Federal de Minas Gerais; Marcela Gonçalves Drummond, Myleus Biotecnologia; Bruno dos Santos Alves Figueiredo Brasil, Embrapa Agroenergia; Denise Aparecida Andrade de Oliveira, Universidade Federal de Minas Gerais

Improving the Tribolium draft Assembly with Physical Maps Based on Imaging Ultra-Long Single DNA Molecules
Nic Herndon, Kansas State University; Jennifer M. Shelton, Kansas State University; Warren Andrews, BioNano Genomics; Weiping Wang, BioNano Genomics; Susan J. Brown, Kansas State University

Mating-Type Locus Characterization and Allelic Diversity in Biosynthetic Genes for Putative Mycotoxins in the Fungal Pathogen Pyrenophora semeniperda
Julie L. Henry, Brigham Young University; Craig E. Coleman, Brigham Young University; Susan E. Meyer, USDA Shrub Sciences Laboratory; Jared Price, Brigham Young University

Understanding Genome Structure and Diversity of the Plant Pathogen, Leptosphaeria maculans
Manuel Matias Zander, University of Queensland; Dhwani A. Patel, University of Queensland; Angela Van de Wouw, University of Melbourne; Kaitao Lai, University of Queensland; Michal T. Lorenc, University of Queensland; Alice C Hayward, University of Queensland; Agnieszka Golicz, University of Queensland; Kenneth Chan, University of Queensland; Philipp Emanuel Bayer, University of Queensland; David Edwards, University of Queensland; Jacqueline Batley, University of Queensland

Assembly, Annotation, and Proteogenomic Mapping of Rotylenchulus reniformis
William S. Sanders, Mississippi State University; Satish Ganji, Mississippi State University; Jennifer N. Arnold, Mississippi State University; Mark A. Arick II, Mississippi State University; Kurt Showmaker, Mississippi State University; Benjamin D. Bartlett, Mississippi State University; Amanda M. Cooksey, University of Arizona; Justin T. Watts, University of Mississippi Medical Center; Scott Knudstrup, University of Michigan; Zenaida V. Magbanua, Mississippi State University; Daniel G. Peterson, Mississippi State University; Martin Wubben, USDA, ARS

The Use of RNA-Seq to Identify a Transcript Encoding an N-Acetylglucosamine-Binding Lectin from the Edible Kurokawa (Boletopsis) Mushroom
Mehul Ganatra, New England Biolabs; Jeremiah Read, New England Biolabs; Colleen McClung, New England Biolabs; Daniela B. Munafo, New England Biolabs; Bradley W. Langhorst, New England Biolabs; Anthony Francis, New England Biolabs; G. Brett Robb, New England Biolabs; Jack Benner, New England Biolabs; Nathan VerBerkmoes, New England Biolabs; Chris Taron, New England Biolabs

The Phylogeny and Genome Size in Myxomycetes
Qi Wang, Research Center of Fungi, Jilin Agricultural University; Shu Li, Research Center of Fungi, Jilin Agricultural University; Xiaoxia Song, Research Center of Fungi, Jilin Agricultural University; Xiaoshu Chen, Research Center of Fungi, Jilin Agricultural University; Yu Li, Research Center of Fungi, Jilin Agricultural University

Genetic Mapping Reveals a very Narrow Qualitative Resistance to Cassava Mosaic Disease
Ismail Rabbi, International Institute of Tropical Agriculture (IITA)

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