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Genome Mapping, Tagging & Characterization: Rice

Date: Monday, January 13, 2014
Time: 7:00 AM-10:00 PM
Room: Grand Exhibit Hall
Exploring the Efficacy of Genomic Selection in Rice Using Elite Lines of the International Rice Research Institute's Irrigated Rice Breeding Program
Jennifer E. Spindel, Cornell University; Hasina Begum, International Rice Research Institute; Bertrand Collard, International Rice Research Institute; Edilberto Redoña, International Rice Research Institute; Susan McCouch, Cornell University

African Rices Genome Projects : GLASS and Irigin
Cécile Monat, IRD; Christine Tranchant-Dubreuil, IRD UMR DIADE; Mathias Lorieux, IRD; Alain Ghesquière, IRD; Manuel Ruiz, CIRAD, UMR AGAP, Institut de Biologie Computationnelle; François Sabot, IRD, UMR DIADE

RiceVarMap: A Comprehensive Database of Rice Genomic Variations
Hu Zhao, Huazhong Agricultural University; Weibo Xie, Huazhong Agricultural University

Finding SNPs and Functional Haplotypes By Whole Genome Re-Sequencing in Rice Core Set
Yong-Jin Park, Kongju National University; Chang-Yong Lee, Kongju National University; Soon-Jae Kwon, Kongju National University; Aye Aye Khaing, Kongju National University; Min-Young Yoon, Kongju National University; Won-Hee Ra, Kongju National University; Xiao-Qiang Wang, Kongju National University; Feng-Peng Li, Kongju National University; Win Htet Oo, Kongju National University; Jae-Wan Park, Kongju National University; Wooju Hong, Kongju National University; Byung-Kook Yun, Kongju National University; Yoo-Hyun Cho, Legume Bio-Resource Center of Green Manure; Beom-Seok Park, The Agricultural Genome Center, NAAS, RDA

Whole Genome Sequencing of Elite Rice Cultivars Reveals Recurrent Copy Number Variation, Diversity Patterns, and Variety Specific Introgression Events in Oryza sativa spp. japonica and indica
Jorge A. Duitama Castellanos, International Center for Tropical Agriculture (CIAT); Daniel F. Cruz, International Center for Tropical Agriculture (CIAT); Brian Scheffler, USDA-ARS Genomics and Bioinformatics Research Unit; Andrew D. Farmer, National Center for Genome Resources (NCGR); Yamid Sanabria, Louisiana State University Agricultural Center; Edgar Torres, International Center for Tropical Agriculture; Joe Tohme, International Center for Tropical Agriculture; James Oard, Louisiana State University Agricultural Center

Genomic and Epigenomic Changes in Rice T-DNA Transformation
Cheng-Kai Shiau, Institute of Plant and Microbial Biology, Academia Sinica; Jo-Ling Liao, Institute of Plant and Microbial Biology, Academia Sinica; Lin-yun Kuang, Institute of Plant and Microbial Biology, Academia Sinica; Yue-ie C. Hsing, Institute Plant and Microbial Biology, Academia Sinica,; Pao-Yang Chen, Institute of Plant and Microbial Biology, Academia Sinica

Simplified Biotron Breeding System (sBBS): An Efficient Rapid Generation Advancement System for Rice Breeding
Junichi Tanaka, National Agriculture and Food Research Organization; Takeshi Hayashi, NARO Agricultural Research Center (NARC)

SNP Genotyping to Accelerate Rice Breeding
Michael J. Thomson, International Rice Research Institute; Christine Jade Dilla-Ermita, International Rice Research Institute; Maria Ymber Reveche, International Rice Research Institute; Geraldine Malitic, International Rice Research Institute; Nadia Vieira Castaneda, International Rice Research Institute; Maria S. Dwiyanti, International Rice Research Institute; Venice Juanillas, International Rice Research Institute; Ramil P. Mauleon, International Rice Research Institute; Joong Hyoun Chin, International Rice Research Institute; Bertrand Collard, International Rice Research Institute; Mark H. Wright, Cornell University; Susan McCouch, Cornell University; Eero Nissila, International Rice Research Institute

MutMap+: A Whole Genome Sequencing (WGS) Based Method for Simultaneous Mapping and Isolation of Genes without Crossing
Rym Fekih, Iwate Biotechnology Research Center; Hiroki Takagi, Iwate Biotechnology Research Center; Muluneh Tamiru Oli, Iwate Biotechnology Research Center; Akira Abe, Iwate Biotechnology Research Center; Satoshi Natsume, Iwate Biotechnology Research Center; Hiroki Yaegashi, Iwate Biotechnology Research Center; Ryohei Terauchi, Iwate Biotechnology Research Center

3D-PCR Screening System of Retrotransposon Tos17 Insertion Lines with Next Generation Sequencing
Mariko Nakagome, National Institute of Agrobiological Sciences; Hirohiko Hirochika, National Institute of Agrobiological Sciences; Akio Miyao, National Institute of Agrobiological Sciences

Gene Isolation and Characterization of a Dominant Dwarf Mutant in Rice
Hee-Jong Koh, Seoul National University; Rihua Piao, Seoul National University

New Genetic Resources of Rice and Wheat for Nutritional Quality Improvement
Nand Kumar Singh, MNNIT, Allahabad India; Manjoo Rani, MNNIT,; Rajkishor Gupta, MNNIT, Allahabad; Shivraj S. Gangoliya, MNNIT, Allahabad; Alok Yadav, MNNIT, Allahabad

QTL Analyses for Agronomic Characteristics in Two Rice Populations Derived from a Wide Compatibility Line
Jeonghwan Seo, Seoul National University; Hee-Jong Koh, Seoul National University

Identification of Stably Expressed QTLs for Grain Yield and Protein Content Using Recombinant Inbred Line and Reciprocal Introgression Line Populations in Rice
Jianlong Xu, Institute of Crop Sciences/National Key Facility for Crop Gene Resources and Genetic Improvement; Lirui Cheng, Institute of Crop Sciences, CAAS, Beijing, China; Qin Xu, Institute of Crop Sciences, CAAS, Beijing, China; Tianqing Zheng, Institute of Crop Sciences, CAAS, Beijing, China; Guoyou Ye, International Rice Research Institute, Philippines; Zhikang Li, Institute of Crop Sciences, CAAS, Beijing, China

Dissecting Unused Natural Variation in Rice for Yield Associated Traits Using High Throughput Sequencing
Dharminder Bhatia, Arizona Genomic Insitute, AZ, USA; Kapeel Chougule, Arizona Genomic Insitute, AZ, USA; Yeisoo Yu, Arizona Genomic Insitute, AZ, USA; Kuldeep Singh, Punjab Agricultural University; Rod A. Wing, Arizona Genomic Insitute, AZ, USA

Genome-Wide Association Mapping in Rice for Yield and Grain Quality
Victoria Bonnecarrere, National Institute of Agricultural Research (INIA); Silvia Garaycochea, National Institute of Agricultural Research (INIA); Schubert Fernandez, National Institute of Agricultural Research (INIA); Juan Rosas, National Institute of Agricultural Research (INIA); Gaston Quero, College of Agriculture - UDELAR; Fernando Perez de Vida, National Institute of Agricultural Research (INIA); Pedro Blanco, National Institute of Agricultural Research (INIA); Lucia Gutierrez, College of Agriculture - UDELAR

Fine Mapping Reveals a Tight Linkage Between QTLs for Grain Weight and Panicle Spikelet Number in Rice
Sang-Nag Ahn, Dept. of Agronomy, Chungnam National University; L.X. Ji, Dept. of Agronomy, Chungnam National University; S.D. Ji, Dept. of Agronomy, Chungnam National University; Dong-Min Kim, Dept. of Agronomy, Chungnam National University; Hyun-Sook Lee, Dept. of Agronomy, Chungnam National University; Ju-Won Kang, Dept. of Agronomy, Chungnam National University

Validation of Quantitative Trait Loci for Spikelets per Panicle and Grain Weight in Rice
Sang-Nag Ahn, Dept. of Agronomy, Chungnam National University; Dong-Min Kim, Dept. of Agronomy, Chungnam National University; Ju-Won Kang, Dept. of Agronomy, Chungnam National University; Hyun-Sook Lee, Dept. of Agronomy, Chungnam National University

Genotype x Environment Interactions for Heat Tolerance of Rice Under Different High Temperature Location
Xing Huang, Seoul National University; Hee-Jong Koh, Seoul National University

Panicle Length QTLs Identified Under Mild Drought and Low P Application in Rice (Oryza sativa L.)
Joong Hyoun Chin, International Rice Research Institute; Ian P. Navea, International Rice Research Institute; Maria S. Dwiyanti, International Rice Research Institute; Sung-Han Kim, Seoul National University; Chenie S. Zamora, International Rice Research Institute; Katreena Titong, International Rice Research Institute; Michael J. Thomson, International Rice Research Institute; Hee-Jong Koh, Seoul National University

Genetic Components and QTL Analysis for Salinity Tolerance in Rice (Oryza sativa L.) at the Reproductive Stage
Reza Mohammadi, Agril. Biotechnology Research Institute of Iran; Merlyn S. Mendioro, IBS, CAS; Genaleen Q. Diaz, IBS, CAS; Andres Godwin Sajise, PBGB, IRRI; Marydee Arceta, PBGB, IRRI; Naireen Aiza Vispo, PBGB, IRRI; Junrey Amas, PBGB, IRRI; Annie Barretto, PBGB, IRRI; Glenn Gregorio, IRRI; Rakesh Kumar Singh, International Rice Research Institute

Exploring Wild Relatives of Rice for Aluminum Tolerance Using Chromosome Segment Substitution Lines (CSSLs)
Juan David Arbelaez, Cornell University; Laura T. Moreno, The University of Melbourne; Mark H. Wright, Cornell University; Namrata Singh, Cornell University; Cecile Grenier, Cirad/CIAT; Cesar P. Martinez, CIAT; Leon Kochian, Robert W. Holley Center, USDA-ARS & Cornell University; Mathias Lorieux, IRD-CIAT; Susan McCouch, Cornell University

Estimating the Age of Domestication Genes in Rice
Hongru Wang, Institute of Genetics and Developmental Biology; Filipe G. Vieira, Departments of Integrative Biology and Statistics; Rasmus Nielsen, Department of Integrative Biology and Statistics; Chengcai Chu, Institute of Genetics and Developmental Biology

Genetics Distance Bias on Domesticated Gene Region Among Rice Accessions Collected in Taiwan
Fu-Jin Wei, Institute of Plant and Microbial Biology, Academia Sinica.; Ai-ling Hour, Department of Life Science, Fu-Jen Catholic University; Hung-Ying Lin, Academia Sinica; Yuan-ching Tsai, Institute of Plant and Microbial Biology, Academia Sinica.; Ming-Hsing Lai, Crop Science Division, Taiwan Agricultural Research Institute.; Shu-Jen Chang, MDARES, COA; Yann-Rong Lin, Department of Agronomy, National Taiwan University; Yue-ie C. Hsing, Institute Plant and Microbial Biology, Academia Sinica,

Analyzing Salt Stress Response in Rice Using Phenomic and Genomic Approaches
Inês S. Pires, New York University and ITQB-UNL; Jonathan Flowers, New York University; Sónia Negrão, King Abdullah University of Science and Technology (KAUST); M. Margarida Oliveira, ITQB-UNL; Michael D. Purugganan, New York University

Genome Structure of Tongil: Korean Green Revolution Variety Derived from Japonica x Indica Hybrids
Dong Gwan Kim, Seoul National University; Backki Kim, Seoul National University; Hee-Jong Koh, Seoul National University

New SNPs and Indels of Starch Synthesis-Related Genes in Korean Waxy and Dull Rice (Oryza sativa L.)
Soon Wook Kwon, Pusan University; Yong-Jin Park, Kongju National University; Feng-Peng Li, Kongju National University; Joohyun Lee, Konkuk University; Yoo-Hyun Cho, Legume Bio-Resource Center of Green Manure

Genotyping-By-Sequence and SNP Discovery in Brazilian Rice Cultivars
Paula R. Kuser-Falcao, Embrapa Agriculture Informatics; Gabriel Feresin, Embrapa Rice and Beans; Marcelo G Narciso, Embrapa Rice and Beans; Claudio Brondani, Embrapa Rice and Beans

Integration of Genetics and RNA-Seq Data to Dissect a Durable Blast Resistance in Rice
Simona Urso, CRA-GPG, Genomics Research Centre; Chiara Biselli, CRA-Rice research unit; Paolo Bagnaresi, CRA Genomics Research Centre; Francesca Desiderio, CRA Genomics Research Centre; Luigi Orrù, CRA Genomics Research Centre; Rosaria Perrini, CRA-Rice research unit; Laura Crispino, FPTP, Parco Tecnologico Padano; Pamela Abbruscato, FPTP, Parco Tecnologico Padano; Pietro Piffanelli, FPTP, Parco Tecnologico Padano; Luigi Cattivelli, CRA Genomics Research Centre; Giampiero Valè, CRA-Rice research unit

Update of Genome-Filtered Markers for Complex Rice Disease Resistance in Doubled-Haploid and Backcross Populations
Yamid Sanabria, Louisiana State University Agricultural Center; Mona M. Meche, Rice Research Station - LSU AgCenter; Christian De Guzman, Louisiana State University Agricultural Center; Dominique Galam, Louisiana State University Agricultural Center; Manuel Esguerra, Louisiana State University Agricultural Center; James Oard, Louisiana State University Agricultural Center

Evaluation of stem non-structural carbohydrates (NSCs) in cultivated Asian rice, Oryza sativa
Diane R Wang, Cornell University; Anthony Greenberg, Cornell University; Susan McCouch, Cornell University

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