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Genome Mapping, Tagging & Characterization: Swine

Date: Monday, January 13, 2014
Time: 7:00 AM-10:00 PM
Room: Grand Exhibit Hall
Unraveling the Genomics of Obesity and Related Metabolic Diseases Using a Pig Model
Merete Fredholm, University of Copenhagen; Haja N. Kadarmideen, University of Copenhagen; Sameer D. Pant, University of Copenhagen; Peter Karlskov-Mortensen, University of Copenhagen; Susanna Cirera, University of Copenhagen; Lisette J.A. Kogelmann, University of Copenhagen; Mette Juul Jacobsen, University of Copenhagen; Camilla S. Bruun, University of Copenhagen; Thomas Mark, University of Copenhagen; Claus B. Jørgensen, University of Copenhagen; Theo H.E. Meuwissen, Norwegian University of Life Sciences

Discovery of 14.6 Million SNP in a Mixed Breed Swine Population
Ralph T. Wiedmann, USDA, ARS, USMARC; Dan Nonneman, USDA, ARS, USMARC; Gary A. Rohrer, USDA, ARS, USMARC

A Draft Genome of Korean Native Pig: Current Status and Its Characteristics
Namshin Kim, Personalized Genomic Medicine Research Center, KRIBB; Won-Hyong Chung, Korean Bioinformation Center, KRIBB; Kyung-Tai Lee, National Institute of Animal Science, RDA; Tae-Hun Kim, National Institute of Animal Science, RDA

Genetic Diversity, Admixture and LD Analyses in Korean Native and Western Pig Breeds Using High Density SNP Panel
Kwan Suk Kim, Chungbuk National University/Department of Animal Science; Zewdu Edea Bedada, Chungbuk National University; Sang-Wook Kim, Chungbuk National University

Exhaustive Comparison of Gene Expression Along Pig Small Intestine and in Peyer’s Patches Performed By RNA-Seq
Núria Mach, INRA, UMR1313 Animal Genetics and Integrative Biology; Mustapha Berri, INRA, UMR ISP, Tours, France; Diane Esquerré, INRA GeT-PlaGe Genomics Facility - GenPhySe; Claire Chevaleyre, INRA, UMR ISP, Tours, France; Gaetan Lemonnier, INRA, UMR GABI, Jouy-en-Josas, France; Yvon Billon, INRA, UE GenESIS, Le Magneraud, France; Patricia Lepage, INRA, UMR MICALIS; Isabelle P. Oswald, INRA, UMR TOXALIM, Toulouse, France; Joël Doré, INRA, UMR 1319 MICALIS; Claire Rogel-Gaillard, INRA, UMR1313 Animal Genetics and Integrative Biology; Jordi Estellé, INRA, UMR1313 Animal Genetics and Integrative Biology

Evaluation of SNP Haplotypes for Regions of Missing Homozygosity in the Pig
Eui-Soo Kim, Iowa State University; Max F. Rothschild, Iowa State University

Copy Number Variation and Signatures of Diversifying Selection Between Chinese and Western Pig Breeds
Yanan Wang, Huazhong Agricultural University; Bang Liu, Key Laboratory of Agricultural Animal Genetics, Breeding and Reproduction of Ministry of Education, Huazhong Agricultural University; Chao Wang, Huazhong Agricultural University; Hongyang Wang, Key Laboratory of Agricultural Animal Genetics, Breeding and Reproduction of Ministry of Education, Huazhong Agricultural University; Bin Fan, Huazhong Agricultural University; Qingde Zhang, Huazhong Agricultural University; Eui-Soo Kim, Iowa State University; Max F. Rothschild, Iowa State University

Analysis of Protegrin-1 Expression in Pigs By RT-PCR, Western Blot and IHC
Min-Kyeung Choi, Department of Animal Biotechnology, Konkuk University; Minh Thong Le, Department of Animal Biotechnology, Konkuk University; Hyesun Cho, Department of Animal Biotechnology, Konkuk University; Nagasundarapandian Soundrarajan, Department of Animal Biotechnology, Konkuk University; Chankyu Park, Department of Animal Biotechnology, Konkuk University

DNA Methylation Analysis in Sperm from Infertile/Subfertile Boars
Herve Acloque, INRA-GenPhySE; Annabelle Congras, INRA-Laboratory of Cellular Genetics; Florence Vignoles, INRA-Laboratory of Cellular Genetics; Sylvain Foissac, INRA-GenPhySE; Emeline Lhuillier, INRA-Laboratory of Cellular Genetics; Olivier Bouchez, INRA GeT Genomics Facility; Juliette Riquet, INRA-Laboratory of Cellular Genetics; Alain Pinton, INRA-ENVT UMR444 Cell Genetics; Martine Bouissou-Matet Yerle, INRA-Laboratory of Cellular Genetics

Analysis of Gene Expression in a Region Associated with Host Response to Porcine Reproductive and Respiratory Syndrome Virus Challenge
Chris Eisley, Department of Statistics, Iowa State University; Eric Fritz-Waters, Department of Animal Science, Iowa State University; Igseo Choi, APDL, BARC, ARS, USDA; James Koltes, Department of Animal Science, Iowa State University; Nick Boddicker, Genesus; James M. Reecy, Iowa State University; Joan K. Lunney, APDL, BARC, ARS, USDA; Susan Carpenter, Department of Animal Science, Iowa State University; Christopher K. Tuggle, Iowa State University; Peng Liu, Department of Statistics, Iowa State University; Jack Dekkers, Department of Animal Science, Iowa State University

DNA Methylation Patterns in Two Porcine Tissues
Jamal Momeni, Aarhus University, Tjele, Denmark; Leila Farajzadeh, Aarhus University, Tjele, Denmark; Lone B. Madsen, Aarhus University, Tjele, Denmark; Knud Larsen, Aarhus University, Tjele, Denmark; Frank Panitz, Aarhus University; Christian Bendixen, Aarhus University, Tjele, Denmark

Genome-Wide DNA Methylation Profile of the Muscle (longissimus dorsi) Tissue in Swine
Woonsu Kim, Chungnam National University; Hye-Sun Park, Chungnam National University; Jeong-Geun Kim, GenDocs, Inc.; Jong Nam Kim, Chungnam National University; Seongwon Seo, Chungnam National University

Evolutionary Characterization of Pig Interferon-Inducible Transmembrane Gene Family and Member Expression Dynamics in Tracheobronchial Lymph Nodes of Pigs Infected with Swine Respiratory Disease Viruses
Laura C. Miller, NADC-ARS-USDA; Yongming Sang, Kansas State University; Zhihua Jiang, Washington State University; Gregory P. Harhay, USDA, ARS, U.S. Meat Animal Research Center (USMARC); Kelly M. Lager, NADC-ARS-USDA

Dissection of Two QTL on SSC2 Identifies Candidate Genes for Ovulation Rate in Swine
Dan Nonneman, USDA, ARS, USMARC; Jim F. Schneider, USDA, ARS, USMARC; Ralph T. Wiedmann, USDA, ARS, USMARC; Jeffrey L. Vallet, USDA, ARS, USMARC; Gary A. Rohrer, USDA, ARS, USMARC

Characterization of Genes Differentially Expressed in Placenta of Yorkshire and Meishan Pigs During Pregnancy
Linjun Hong, Huazhong Agricultural University; Shu-Hong Zhao, Huazhong Agricultural University; Mei Yu, Huazhong Agricultural University

Not All SCID Pigs Are Created Equally: Two Natural Mutations Cause Severe Combined Immunodeficiency (SCID) in Pigs
Emily Waide, Department of Animal Science, Iowa State University; Christopher K. Tuggle, Iowa State University; Matthew Ellinwood, Department of Animal Science, Iowa State University; Jason Ross, Department of Animal Science, Iowa State University; Jack Dekkers, Department of Animal Science, Iowa State University

Identification of a Putative Quantitative Trait Nucleotide (QTN) for Host Response to Porcine Respiratory and Reproductive Syndrome (PRRS) Virus Infection
Eric Fritz-Waters, Department of Animal Science, Iowa State University; James Koltes, Department of Animal Science, Iowa State University; Igseo Choi, APDL, BARC, ARS, USDA; Nick Serao, Department of Animal Science, Iowa State University; Martine Schroyen, Department of Animal Science, Iowa State University; Joan K. Lunney, APDL, BARC, ARS, USDA; Jack C.M. Dekkers, Department of Animal Science, Iowa State University; Christopher K. Tuggle, Department of Animal Science, Iowa State University; Susan Carpenter, Department of Animal Science, Iowa State University; James M. Reecy, Iowa State University

Addressing Trait-Dependent Expression of Genes in QTL-Regions for WHC By Tiling Array and mRNA-Seq Analysis
Klaus Wimmers, Leibniz-Institute for Farm Animal Biology (FBN); Yang Du, Leibniz-Institute for Farm Animal Biology (FBN); Nares Trakooljul, Leibniz-Institute for Farm Animal Biology (FBN); Eduard Murani, Leibniz-Institute for Farm Animal Biology (FBN); Siriluck Ponsuksili, Leibniz-Institute for Farm Animal Biology (FBN)

The Effect of Protein Abundance in Porcine Skeletal Muscle on the Expression of Water Holding Capacity
Christiane Neuhoff, University of Bonn; Mehmet Ulas Cinar, University of Bonn; Dawit Tesfaye, University of Bonn; Ernst Tholen, University of Bonn; Karl Schellander, University of Bonn; Christian Looft, University of Bonn; Christine Große-Brinkhaus, University of Bonn

Testing for a Genetic Association with Heart Lesions in Market Hogs That Died In-Transit to an Ontario Abattoir
Katherine J Zurbrigg, University of Guelph, Ontario Canada; Eui-Soo Kim, Iowa State University; Tony van Dreumel, Animal Health Laboratory-University of Guelph; Max F. Rothschild, Iowa State University

Whole Blood Transcriptome Analyses of Swine Responses to PRRSV Infection
Igseo Choi, USDA ARS; Hua Bao, University of Alberta; Arun Kommadath, University of Alberta; Xu Sun, University of Alberta; Yan Meng, University of Alberta; Leluo Guan, University of Alberta; Graham S. Plastow, University of Alberta; Raymond R. Rowland, Kansas State University; Samuel M. Abrams, USDA ARS; Joan K. Lunney, USDA ARS BARC; Paul Stothard, Department of Agricultural, Food and Nutritional Science

Genome-Wide miRNA Expression Profiling of Pietrain PAM Infected with/without PRRSV
Qian Liu, College of Anim Sci, Huazhong Agricultural University; Min Liu, College of Vet Med, Huazhong Agricultural University; Huijuan Li, College of Anim Sci, Huazhong Agricultural University; Yan Luo, College of Anim Sci, Huazhong Agricultural University; Haisheng Ding, College of Anim Sci, Huazhong Agricultural University; Siwen Jiang, College of Anim Sci, Huazhong Agricultural University; Yuanzhu Xiong, College of Anim Sci, Huazhong Agricultural University; Bo Zuo, College of Anim Sci, Huazhong Agricultural University; Dequan Xu, College of Anim Sci, Huazhong Agricultural University

Signatures of Adaptive Selection in Indigenous Pigs: Implications for African Swine Fever (ASF)
Fidalis Denis N. Mujibi, International Livestock Research Institute (ILRI); Edward Okoth, International Livestock Research Institute (ILRI); Richard P. Bishop, International Livestock Research Institute (ILRI); Graham S Plastow, University of Alberta; Lian Thomas, University of Edinburgh; Eric Fevre, University of Liverpool; Max F. Rothschild, Iowa State University

Can Quantification of sjTRECs be Used to Distinguish Between SCID and Non-SCID Piglets?
Martine Schroyen, Department of Animal Science, Iowa State University; Melissa Herrmann, Department of Animal Science, Iowa State University; Ellis J. Powell, Iowa State University; Emily H. Waide, Iowa State University; Jack C.M. Dekkers, Department of Animal Science, Iowa State University; Christopher K. Tuggle, Department of Animal Science, Iowa State University

Effect of Low Energy, High Fiber Diets on Divergent Residual Feed Intake Lines in Swine
Emily D. Mauch, Iowa State University; Jennifer M. Young, Iowa State University; John F. Patience, Iowa State University; Nicholas K. Gabler, Iowa State University; Jack C.M. Dekkers, Iowa State University

The Breed Differences in SLA Haplotypes from the Pigs for Xenotransplantation Researches in Korea
Nu Ri Choi, Department of Animal Science and Biotechnology, College of Agriculture and Life Sciences, Chungnam National University; Woo-Young Jung, National Agricultural Cooperative Federation; Dongwon Seo, Chungnam Natl Univ/Animal Science; Kimyung Choi, Optipharm Solution Inc; Jun Heon Lee, Department of Animal Science and Biotechnology, College of Agriculture and Life Sciences, Chungnam National University

Multi Locus High Resolution Typing of SLA Class II Genes, SLA-DQA, -DQB1 and -DRB1, using Genomic DNA Multiplex PCR and Direct Sequencing
Chankyu Park, Department of Animal Biotechnology, Konkuk University; Minh Thong Le, Department of Animal Biotechnology, Konkuk University; Hojun Choi, Department of Animal Biotechnology, Konkuk University

Heritability Estimates Using 60K Porcine SNPs Indicate No ‘missing heritability problem’ in Domesticated Animals
Taeheon Lee, Seoul National University; Kyung-Tai Lee, National Institute of Animal Science, RDA; Jaemin Kim, Seoul National University; Gul-Won Jang, National Institute of Animal Science, RDA; JaeGwan Choi, National Institute of Animal Science, RDA; Kyuho Cho, National Institute of Animal Science, RDA; Tae-Hun Kim, National Institute of Animal Science, RDA; Heebal Kim, Seoul National University

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