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Analysis of Complex Genomes

Advances in genomics continue to drive paradigm-shifting changes in science and society. In this workshop, speakers and participants will discuss advances, accomplishments, questions, opportunities and challenges in complex genome assembly, analysis, modification and manipulation.
Date: Saturday, January 11, 2014
Time: 4:00 PM-6:10 PM
Room: Town and Country
Organizers:
Boulos Chalhoub , Hongbin Zhang and David Stelly
4:00 PM
Optical Mapping and Nanocoding Systems Potentiate Genome Assembly and Discover Structural Variants
Shiguo Zhou, University of Wisconsin-Madison; Konstantinos Potamousis, University of Wisconsin-Madison; Steve Goldstein, University of Wisconsin-Madison; Michael Place, University of Wisconsin-Madison; Michael Bechner, University of Wisconsin-Madison; Prabu Ravindran, University of Wisconsin-Madison; Kristy Kounovsky-Shafer, University of Wisconsin-Madison; Louise Pape, University of Wisconsin-Madison; Brian Teague, University of Wisconsin-Madison; John Nguyen, University of Southern California; Fusheng Wei, Arizona Genomics Institute, University of Arizona; Vivek Krishnakumar, J. Craig Venter Institute; Victor Guryev, Hubrecht Institute; Shu Ouyang, Michigan State University; Christopher D. Town, J. Craig Venter Institute; Edwin Cuppen, Hubrecht Institute; Rod A. Wing, Arizona Genomics Institute, University of Arizona; C. Robin Buell, Department of Plant Biology and DOE Great Lakes Bioenergy Research Center, Michigan State University; Juan F. Medrano, University of California-Davis; Jeffrey M. Kidd, University of Washington; Evan Eichler, University of Washington; Michael Waterman, University of Southern California; David C. Schwartz, University of Wisconsin-Madison

4:20 PM
Simplifying Complex Genomes: Flow Sorting Single Chromosomes and Whole Genomes after Fluorescent In Situ Hybridization in Suspension - FISHIS
Sergio Lucretti, ENEA - Italian Agency for New Technologies; Debora Giorgi, ENEA - Italian Agency for New Technologies; Anna Farina, ENEA - Italian Agency for New Technologies; Valentina Grosso, ENEA Casaccia Research Centre, Plant Genetics & Genomics

5:00 PM
Integrated Syntenic and Phylogenomic Analyses of Polyploidy Events in Monocots
Yuannian Jiao, Plant Genome Mapping Laboratory, University of Georgia; Jingping Li, University of Georgia; Haibao Tang, University of Arizona; Andrew H. Paterson, Plant Genome Mapping Laboratory, University of Georgia

5:20 PM
Deep Transcriptome Sequencing Provides New Insights into the Bread Wheat Genome Structural and Functional Organization
Lise Pingault, INRA UMR 1095 GDEC; Frederic Choulet, INRA GDEC; Adriana Alberti, CEA - Genoscope; Natasha Glover, INRA GDEC; Patrick Wincker, CEA - Genoscope; Catherine Feuillet, Bayer CropScience; International Wheat Genome Sequencing Consortium, IWGSC; Etienne Paux, INRA GDEC

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