2173
IWGSC - Standards and Protocols

Update activity on wheat genome sequencing activity with a focus on data standards and new protocols being developed
Date: Tuesday, January 14, 2014
Time: 1:30 PM-6:10 PM
Room: Pacific Salon 3
Organizers:
Jane Rogers and Catherine Feuillet
1:30 PM
Using LTC Software for Wheat Physical Mapping: Increasing Contig Lengths and MTP Quality
Zeev M. Frenkel, University of Haifa, Institute of Evolution; Vladimir A. Glikson, MultiQTL Ltd.; Dina Raats, University of Haifa, Institute of Evolution; Bujie Zhan, Norwegian University of Life Sciences; Tatiana Belova, Norwegian University of Life Sciences; Etienne Paux, INRA GDEC; Tzion Fahima, University of Haifa, Institute of Evolution; Catherine Feuillet, INRA GDEC; Odd-Arne Olsen, Norwegian University of Life Sciences; Simen Rød Sandve, Norwegian University of Life Sciences; Abraham B. Korol, University of Haifa, Institute of Evolution

1:50 PM
Assembling a Pseudomolecule for a Wheat Chromosome: The 3B Experience
Frederic Choulet, INRA GDEC; Adriana Alberti, CEA - Genoscope; Valerie Barbe, CEA - Genoscope; Sébastien Theil, INRA GDEC; Pierre Sourdille, INRA GDEC; François Balfourier, INRA GDEC; Jean-Marc Aury, CEA - Genoscope; Hélène Bergès, INRA - CNRGV; Jaroslav Doležel, Institute of Experimental Botany; Hadi Quesneville, INRA - URGI; Patrick Wincker, CEA - Genoscope; Catherine Feuillet, INRA GDEC

2:10 PM
Strategy Developments for Wheat Chromosome MTP Sequencing
Valerie Barbe, CEA - Genoscope; Adriana Alberti, CEA - Genoscope; Arnaud Couloux, CEA - Genoscope; Frederic Choulet, INRA GDEC; Céline Durand, CEA - Genoscope; Sophie Mangenot, CEA - Genoscope; Etienne Paux, INRA GDEC; Catherine Feuillet, INRA GDEC; Patrick Wincker, CEA - Genoscope

2:30 PM
Toward the Reference Genome Sequence of Wheat Chromosome 6B; BAC-By-BAC Sequencing and Assembling
Hirokazu Handa, National Institute of Agrobiological Sciences; Hiroyuki Kanamori, National Institute of Agrobiological Sciences; Fuminori Kobayashi, National Institute of Agrobiological Sciences; Jun Kawai, RIKEN PMI; Jianzhong Wu, National Institute of Agrobiological Sciences; Shuhei Nasuda, Graduate School of Agriculture, Kyoto University; Jaroslav Doležel, Institute of Experimental Botany; Yasunari Ogihara, Kihara Inst. Biol. Res., Yokohama City University; Takashi Matsumoto, National Institute of Agrobiological Sciences

2:50 PM
Chromosome 1A Progress Update
Andrew G. Sharpe, National Research Council Canada / Global Institute for Food Security (U of S)

3:10 PM
An Optimised Approach to Sequence and Assemble BACs: Application to Bread Wheat Chromosome Arm 7DS
Paul Visendi, University of Queensland; Philipp Emanuel Bayer, University of Queensland; Agnieszka Golicz, University of Queensland; Helena Stankova, Institute of Experimental Botany; Satomi Hayashi, University of Queensland; Paul J. Berkman, CSIRO Plant Industry; Pradeep Ruperao, University of Western Australia; Bhavna Hurgobin, University of Queensland; Kenneth Chan, University of Queensland; Jaroslav Doležel, Institute of Experimental Botany; Hana Simkova, Institute of Experimental Botany; Jacqueline Batley, University of Queensland; David Edwards, University of Queensland

3:30 PM
Break


3:50 PM
IWGSC Sequence Repository at URGI: New Features and Blast Tool
Michael Alaux, INRA - URGI; Françoise Alfama, INRA - URGI; Loic Couderc, INRA - URGI; Véronique Jamilloux, INRA - URGI; Claire Viseux, INRA - URGI; Mikael Loaec, INRA - URGI; Delphine Steinbach, INRA - URGI; Hadi Quesneville, INRA - URGI

4:10 PM
Wheat Genomics Resources at Ensembl Plants
Paul J. Kersey, EMBL - The European Bioninformatics Institute; Arnaud Kerhornou, EMBL-The European Bioinformatics Institute; Dan Bolser, EMBL - The European Bioinformatics Institute

4:50 PM
Anchoring and Ordering NGS Contig Assemblies by Population Sequencing (POPSEQ)
Martin Mascher, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK)

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