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Managing Crop Phenotype Data

The final frontier for the application of plant genomics to plant improvement may be the acquisition and analysis of phenotype data for the multigenic, environment-sensitive traits important for crops grown in the field. High-quality phenotype data remains expensive to produce, but its value is being leveraged by interpreting it in terms of associated genome-wide molecular marker alleles. This workshop will address the current status and plans for phenotype data input, organization, standards, querying, delivery, integration with genotype data, and analysis.
Date: Saturday, January 11, 2014
Time: 10:30 AM-12:40 PM
Room: Pacific Salon 2
Organizers:
Jean-Luc Jannink and David E. Matthews
10:30 AM
Information System for Phenotype Data: Trait, Trials and Genotypes Identification and Integration in GnpIS
Cyril Pommier, INRA - URGI; Michael Alaux, INRA - URGI; Sophie Durand, INRA - URGI; Raphael Flores, INRA - URGI; Aminah Keliet, INRA - URGI; Erik Kimmel, INRA - URGI; CÚlia Michotey, INRA - URGI; Nacer Mohellibi, INRA - URGI; Dorothee Valdenaire, INRA URGI; P. Roumet, AGAP - INRA; Delphine Steinbach, INRA - URGI; Hadi Quesneville, INRA - URGI

10:50 AM
On Minimum Reporting Requirements and Standard Formatting of Plant Phenotypic Data
Hanna Cwiek, Institute of Plant Genetics, Polish Academy of Science; Cyril Pommier, INRA - URGI; Uwe Scholz, Institute of Plant Genetics and Crop Plant Research (IPK); Matthias Lange, Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben; Jinbo Chen, Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben; Aalt D.J. van Dijk, Biometris, Wageningen University; Jan-Peter Nap, Plant Research International, Wageningen University; Jan van Oeveren, Keygene; Paul J. Kersey, EMBL - The European Bioinformatics Institute; Pawel Krajewski, Institute of Plant Genetics PAS

11:10 AM
Building Breeding Database in GDR, Genome Database for Rosaceae
Sook Jung, Washington State University; Taein Lee, Washington State University; Stephen P. Ficklin, Washington State University; Katherine M. Evans, Washington State University; Cameron Peace, Washington State University; Dorrie Main, Washington State University

11:30 AM
CassavaBase - A Platform for Next-Generation Breeding
Lukas Mueller, Boyce Thompson Institute for Plant Research; Naama Menda, Boyce Thompson Institute for Plant Research; Isaak Y. Tecle, Boyce Thompson Institute for Plant Research; Jeremy D. Edwards, Boyce Thompson Institute for Plant Research

11:50 AM
Field Book: An Open-Source Application for Phenotypic Data Collection on Android
Trevor W. Rife, Kansas State University; Jesse Poland, USDA ARS

12:10 PM
Managing Plot Level Phenotype Data
Clay Birkett, USDA-ARS; Victoria Carollo Blake, USDA ARS WRRC; David E. Matthews, USDA ARS; Jean-Luc Jannink, USDA, Cornell University

12:30 PM
The Breeders' Database
David E. Matthews, USDA ARS; Jean-Luc Jannink, USDA, Cornell University; Olin Anderson, USDA ARS, Western Regional Research Center

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