2616
Coffee Genomics

Date: Sunday, January 11, 2015
Time: 4:00 PM-6:10 PM
Room: Esquire - Meeting House
Organizers:
Marcela Yepes and Philippe Lashermes
4:00 PM
Introductory Remarks


4:20 PM
Long-Read Deep Sequencing and Assembly of the Allotetraploid Coffea arabica cv. Caturra and its Maternal Ancestral Diploid species Coffea eugenioides
Alvaro Gaitan, Centro Nacional de Investigaciones de Cafe, CENICAFE; Marco A. Cristancho, Centro Nacional de Investigaciones de Cafe, CENICAFE; Carmenza E. Gongora, Centro Nacional de Investigaciones de Cafe, CENICAFE; Pilar Moncada, Centro Nacional de Investigaciones de Cafe, CENICAFE; Huver Posada, Federacion Nacional de Cafeteros de Colombia (FNC)/ Centro Nacional de Investigaciones de Café (CENICAFE); Fernando Gast, Centro Nacional de Investigaciones de Cafe, CENICAFE; Marcela Yepes, Cornell University/ School of Integrative Plant Sciences/ Plant Pathology and Plant Microbe Biology Section; Herb Aldwinckle, Cornell University/ School of Integrative Plant Sciences/ Plant Pathology and Plant Microbe Biology Section

5:00 PM
Progress report on the sequencing and assembly of the allotetraploid Coffea arabica var. Bourbon genome
Michele Morgante, Università di Udine; Simone Scalabrin, IGA Technology Services; Davide Scaglione, IGA Technology Services; Federica Cattonaro, Istituto di Genomica Applicata; Federica Magni, Istituto di Genomica Applicata; Irena Jurman, Istituto di Genomica Applicata; Mario Cerutti, Lavazza SpA; Furio Suggi Liverani, Illycaffè SpA; Luciano Navarini, Illycaffè SpA; Lorenzo Del Terra, Illycaffè SpA; Gloria Pellegrino, Lavazza SpA; Giorgio Graziosi, DNA Analytica Srl; Nicola Vitulo, Dipartimento di Biologia; Università di Padova; Giorgio Valle, Dipartimento di Biologia; Università di Padova

5:20 PM
Dihaploid Coffea arabica Genome Sequencing and Assembly
Alexandre de Kochko, IRD UMR DIADE; Dominique Crouzillat, Centre R&D Nestlé Tours; Michel Rigoreau, Centre R&D Nestlé Tours; Maud Lepelley, Centre R&D Nestlé Tours; Laurence Bellanger, Centre R&D Nestlé Tours; Virginie Merot l'Anthoene, Centre R&D Nestlé Tours; Celine Vandecasteele, Centre R&D Nestlé Tours; Romain Guyot, IRD UMR DIADE; Valerie Poncet, IRD UMR DIADE; Christine Tranchant-Dubreuil, IRD UMR DIADE; Perla Hamon, IRD UMR DIADE; Serge Hamon, IRD UMR DIADE; Emmanuel Couturon, IRD UMR DIADE; Patrick Descombes, NIHS; Deborah Moine, NIHS; Lukas Mueller, Boyce Thompson Institute for Plant Research; Susan R. Strickler, Boyce Thompson Institute for Plant Research; Alan Andrade, Embrapa; Luiz-Filipe Protasio Pereira, Embrapa Café; Pierre Marraccini, CIRAD; Giovanni Giuliano, ENEA - Italian Agency for New Technologies; Alessia Fiore, ENEA - Italian Agency for New Technologies; Marco Pietrella, ENEA - Italian Agency for New Technologies; Giuseppe Aprea, ENEA - Italian Agency for New Technologies; Ray Ming, University of Illinois at Urbana-Champaign; Jennifer Wai, University of Illinois Urbana-Champaign; Douglas S. Domingues, Instituto Agronômico do Paraná; Alexandre Paschoal, Univ. of Londrina; Gerrit Kuhn, Pacific Biosciences; Jonas Korlach, Pacific Biosciences; Jason Chin, Pacific Biosciences; David Sankoff, University of Ottawa; Chunfang Zheng, University of Ottawa; Victor A. Albert, University at Buffalo

5:40 PM
Transposable Element Distribution, Abundance and Impact in Genome Evolution in the Genus Coffea
Romain Guyot, IRD UMR DIADE; Thibaud Darre, Institut de Recherche pour le Développement; Dominique Crouzillat, Centre R&D Nestlé Tours; Michel Rigoreau, Centre R&D Nestlé Tours; Serge Hamon, Institut de Recherche pour le Développement; Alexandre de Kochko, Institut de Recherche pour le Développement; Emmanuel Couturon, IRD UMR DIADE; Perla Hamon, IRD UMR DIADE

6:00 PM
Impact of Transposable Elements on the Evolution of Coffea arabica (Rubiaceae)
Elaine S. Dias, UNESP - Universidade Estatual Paulista; Serge Hamon, IRD UMR DIADE; Perla Hamon, IRD UMR DIADE; Romain Guyot, IRD UMR DIADE; Alexandre de Kochko, IRD UMR DIADE; Claudia Carareto, UNESP - Universidade Estatual Paulista

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