2652
GMOD

GMOD is a collection of interoperable open source software components for visualizing, annotating, and managing biological data. GMOD software has been used by hundreds of organizations around the world to make their data available to their communities.
Date: Wednesday, January 14, 2015
Time: 10:30 AM-5:00 PM
Room: Golden West
Organizer:
Scott Cain
10:30 AM
The Future of GMOD and Chado
Scott Cain, Ontario Institute for Cancer Research

10:50 AM
KnowPulse: A Breeder-Focused Web Portal That Integrates Genetics and Genomics of Pulse Crops with Model Genomes
Lacey-Anne Sanderson, University of Saskatchewan; Albert Vandenberg, University of Saskatchewan; Bunyamin Taran, University of Saskatchewan; Tom Warkentin, University of Saskatchewan; Kirstin Bett, University of Saskatchewan

11:10 AM
Phytozome Population Diversity Visualization in JBrowse: A very large Dataset Case Study
Richard D Hayes, DOE Joint Genome Institute; Jeremy L. Phillips, DOE Joint Genome Institute; Joseph W. Carlson, DOE Joint Genome Institute; David M. Goodstein, DOE Joint Genome Institute; Daniel S. Rokhsar, DOE Joint Genome Institute

11:30 AM
JBrowse within the Arabidopsis Information Portal
Maria Kim, J. Craig Venter Institute; Vivek Krishnakumar, J. Craig Venter Institute; Benjamin D. Rosen, J. Craig Venter Institute; Chia-Yi Cheng, J. Craig Venter Institute; Erik Ferlanti, J. Craig Venter Institute; Jason R. Miller, J. Craig Venter Institute; Christopher D. Town, J. Craig Venter Institute

11:50 AM
Apollo + i5K: Collaborative Curation and Interactive Analysis of Genomes
Monica C. Munoz-Torres, Lawrence Berkeley National Laboratory; Nathan A Dunn, Lawrence Berkeley National Laboratory; Monica Poelchau, USDA/Agricultural Resarch Service/National Agricultural Library; Colin Diesh, Division of Animal Sciences, University of Missouri; Deepak Unni, Division of Animal Sciences, University of Missouri; Ian Holmes, Department of Bioengineering; Christine G. Elsik, Division of Animal Sciences, University of Missouri; Suzanna Lewis, Lawrence Berkeley National Laboratory

12:10 PM
The Teosinte (Zea mays ssp. parviglumis) de novo Genome Assembly
Arun S. Seetharam, Iowa State University

12:30 PM
Break


1:30 PM
Panel Discussion


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