2665
IWGSC - Standards and Protocols

Update activity on wheat genome sequencing activity with a focus on data standards and new protocols being developed
Date: Tuesday, January 13, 2015
Time: 1:30 PM-6:10 PM
Room: Pacific Salon 3
Organizers:
Jane Rogers and Catherine Feuillet
1:30 PM
Introductory Remarks


1:50 PM
Progress in Sequencing and Scaffolding Chromosome 1A
Andrew G. Sharpe, National Research Council Canada / Global Institute for Food Security (U of S)

2:30 PM
Chromosome 1B: A Step Further in the Sequencing of the Hexaploid Wheat Genome
Adriana Alberti, CEA - Genoscope; Valerie Barbe, CEA - Genoscope; Arnaud Couloux, CEA - Genoscope; Frederic Choulet, INRA GDEC; Sophie Mangenot, CEA - Genoscope; Karine Labadie, CEA - Genoscope; Jean Marc Aury, CEA - Genoscope; Romain Philippe, INRA GDEC; Céline Durand, CEA - Genoscope; Caroline Belser, CEA - Genoscope; Arnaud Bellec, INRA - CNRGV; Hélène Bergès, INRA - CNRGV; Zeev M. Frenkel, University of Haifa; Tzion Fahima, University of Haifa; Abraham B. Korol, Institute of Evolution, University of Haifa; International Wheat Genome Sequencing Consortium, IWGSC; Catherine Feuillet, Bayer CropScience; Etienne Paux, INRA GDEC; Patrick Wincker, CEA - Genoscope

2:50 PM
Improving the Physical Map and Sequence of the 7DS with a BioNano Map
Hana Simkova, Institute of Experimental Botany; Alex Hastie, BioNano Genomics; Helena Stankova, Institute of Experimental Botany; Jan Vrana, Institute of Experimental Botany; Marie Kubaláková, Institute of Experimental Botany; Paul Visendi, University of Brisbane; Satomi Hayashi, University of Queensland; Ming-Cheng Luo, Department of Plant Sciences, UC Davis; Jacqueline Batley, University of Western Australia; David Edwards, University of Queensland; Jaroslav Dolezel, Institute of Experimental Botany

3:10 PM
Discussion


3:30 PM
Break


3:50 PM
BioNano Genome Map to Facilitate the Assembly of the Aegilops tauschii Genome
Ming-Cheng Luo, Department of Plant Sciences, University of California; Tingting Zhu, Department of Plant Sciences, University of California, Davis; Karin R. Deal, Department of Plant Sciences, University of California, Davis; Armond Murray, Department of Plant Sciences, University of California; Sonny Van, Department of Plant Sciences, University of California; Thanh C. Ngo, Department of Plant Sciences, University of California; Shuyang Liu, Department of Plant Sciences, University of California; Juan C. Rodriguez, Department of Plant Sciences, University of California; Hai Long, Department of Plant Sciences, University of California; Lichan Xiao, Department of Plant Sciences, University of California; Naxin Huo, Department of Plant Sciences, University of California; Luis Curiel, Department of Plant Sciences, University of California; Luxia Yuan, Department of Plant Sciences, University of California; Yi Wang, Department of Plant Sciences, University of California; Yong Q. Gu, USDA ARS, Western Regional Research Center; Olin Anderson, USDA ARS, Western Regional Research Center; Daniela Puiu, Johns Hopkins University, School of Medicine; Geo Pertea, Johns Hopkins University, School of Medicine; Steven L Salzberg, Johns Hopkins University, School of Medicine; Shuhong Ouyang, China Agricultural University; Zhenzhong Wang, China Agricultural University; Yong Liang, China Agricultural University; Qixin Sun, China Agricultural University; Zhiyong Liu, China Agricultural University; Long Mao, Chinese Academy of Agricultural Sciences; Zhengqiang Ma, Nanjing Agricultural University; Jan Dvorak, Department of Plant Sciences, University of California

4:10 PM
Using LTC Software for Physical Mapping and Assisting in Sequence Assembly
Zeev M. Frenkel, Institute of Evolution, University of Haifa; Vladimir A. Glikson, MultiQTL Ltd.; Abraham B. Korol, Institute of Evolution, University of Haifa

4:30 PM
Application of RH Mapping in Wheat Genome Analysis
Vijay K. Tiwari, Kansas State University

4:50 PM
IWGSC Sequence Repository: How to Facilitate Pseudomolecule Assembly?
Michael Alaux, INRA - URGI; Frederic Choulet, INRA GDEC; Loic Couderc, INRA - URGI; Françoise Alfama, INRA - URGI; Véronique Jamilloux, INRA - URGI; Thomas Letellier, INRA - URGI; Raphael Flores, INRA - URGI; Claire Guerche, INRA - URGI; Mikael Loaec, INRA - URGI; Etienne Paux, INRA GDEC; Delphine Steinbach, INRA - URGI; Hadi Quesneville, INRA - URGI

5:10 PM
Discussion


See more of: Workshops