Computer Demo 1

Talks and demonstrations about software and online resources for supporting and advancing research.
Date: Saturday, January 10, 2015
Time: 1:30 PM-3:40 PM
Room: California
Organizers:
Dave Clements and Brian Smith-White
1:30 PM
C01
The European Variation Archive at EMBL-EBI
Gary Saunders, European Bioinformatics Institute (EMBL-EBI)

1:50 PM
C02
WebApollo 2.0: A Scalable, Distributed Sequence Annotation Editor
Nathan A Dunn, Berkeley Bioinformatics Open-source Projects; Monica C. Munoz-Torres, Lawrence Berkeley National Laboratory; Colin Diesh, Division of Animal Sciences, University of Missouri; Deepak Unni, S134D Animal Science Research Center; Christine G. Elsik, delete; Ian Holmes, Department of Bioengineering; Suzanna Lewis, Berkeley Bioinformatics Open-source Projects

2:10 PM
C03
GenSAS: A Web-Based Platform for Automated and Manual Curation of Genomic Sequence
Stephen P. Ficklin, Washington State University; Taein Lee, Washington State University; Jodi L. Humann, Washington State University; Chun-Huai Cheng, Washington State University; Jill Wegrzyn, University of Connecticut; David Neale, Dept. Plant Sciences University of California Davis; Dorrie Main, Washington State University

2:30 PM
C04
Sequence Viewer and Genome Workbench - Sequence Display and Analysis Tools
Kim D. Pruitt, National Center for Biotechnology Information (NCBI/NLM/NIH); Robert Falk, NIH/NLM/NCBI; Michael DiCuccio, National Center for Biotechnology Information; Terence Murphy, NIH/NLM/NCBI; Anatoliy Kuznetsov, National Center for Biotechnology Information

2:50 PM
C05
Analysing SNP Consequences on Genes and Proteins with Ensembl's Variant Effect Predictor
Emily Perry, European Bioinformatics Institute (EMBL-EBI)

3:10 PM
C06
Genomicus: Fast and Intuitive Comparative Genomics in Plant and Animal Genome
Alexandra Louis, IBENS Paris; Thi Thuy Nga Nguyen, IBENS Paris; Matthieu Muffato, EBI; Hugues Roest Crollius, Ecole Normale Supérieure, Institute of Biology (IBENS)

3:30 PM
C07
BamBam: Genome Sequence Analysis Tools for Biologists
Justin T. Page, Brigham Young University; Zach S. Liechty, Brigham Young University; Mark D. Huynh, Brigham Young University; Joshua A. Udall, Brigham Young University

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