3070
Coffee Genomics

Date: Sunday, January 10, 2016
Time: 4:00 PM-6:10 PM
Room: Pacific Salon 3
Organizers:
Marcela Yepes and Philippe Lashermes
4:00 PM
Building High Quality Reference Genome Assemblies using PACBio long reads for the Allotetraploid Coffea arabica and its Diploid Ancestral Maternal Species Coffea eugenioides
Marcela Yepes, Cornell University/ School of Integrative Plant Sciences/ Plant Pathology and Plant Microbe Biology Section; Alvaro Gaitan, Centro Nacional de Investigaciones de Cafe, CENICAFE; Marco A. Cristancho, Colombian Center for Bioinformatics and Computational Biology (Bios); Luis Fernando Rivera, Colombian Center for Bioinformatics and Computational Biology (Bios); Juan Carlos Correa, Colombian Center for Bioinformatics and Computational Biology (Bios); Carlos Ernesto Maldonado, Centro Nacional de Investigaciones de Cafe, CENICAFE; Carmenza E. Gongora, Centro Nacional de Investigaciones de Cafe, CENICAFE; Andres Mauricio Villegas, Centro Nacional de Investigaciones de Cafe, CENICAFE; Huver Posada, Federacion Nacional de Cafeteros de Colombia (FNC)/ Centro Nacional de Investigaciones de Café (CENICAFE); Aleksey Zimin, University of Maryland; James A. Yorke, University of Maryland; Keithanne Mockaitis, Indiana University; Herb Aldwinckle, Cornell University/ School of Integrative Plant Sciences/ Plant Pathology and Plant Microbe Biology Section

4:40 PM
High-Throughput Targeted Genotyping of Coffea arabica and Coffea canephora Using Next Generation Sequencing
Marcio Resende, RAPiD Genomics LLC; Eveline Caixeta, EMBRAPA; Emilly Ruas Alkimin, Federal University of Viçosa; Tiago Vieira Sousa, Federal University of Viçosa; Marcos D.V. Resende, EMBRAPA - sucursal; Srikar Chamala, RAPiD Genomics; Leandro G Neves, RAPiD Genomics LLC

5:00 PM
Mixed Model to Multiple Harvest Location Trial Applied to Genomic Prediction in Coffea canephora
Luis Felipe V. Ferrão, University of São Paulo (ESALQ/USP); Romario G. Ferrão, Instituto Capixaba de Pesquisa,Assistência Técnica e Extensão Rural; Maria A. G. Ferrão, Instituto Capixaba de Pesquisa e Assistência Técnica e Extensão Rural / Embrapa Café; Aymbire Fonseca, Instituto Capixaba de Pesquisa e Assistência Técnica e Extensão Rural / Embrapa Café; Antônio Augusto Franco Garcia, University of São Paulo (ESALQ/USP)

5:20 PM
Threats of Climate Change on Arabica Coffee (Coffea arabica L.) in its Center of Origin Ethiopia
Girma Adugna, Jimma University; Gezahegn B Yadessa, Jimma University; Fikre L Ocho, Jimma University

5:40 PM
Molecular markers reveal high variability among populations of Coffea arabica in its native range of the Afromontane forests of Ethiopia
Kassahun Tesfaye, Addis Ababa University; Ludo Muller, Institut für Biologie/Botanik Freie Universität Berlin; Kim Govers, Botanischer Garten und Botanisches Museum Berlin-Dahlem and Institut für Biologie/Botanik, Freie Universität Berlin, Germany; Endashaw Bekele, Addis Ababa University; Thomas Borsch, Botanischer Garten und Botanisches Museum Berlin-Dahlem and Institut für Biologie/Botanik, Freie Universität Berlin, , Germany.

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