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Managing Crop Phenotype Data

The final frontier for the application of plant genomics to plant improvement may be the acquisition and analysis of phenotype data for the multigenic, environment-sensitive traits important for crops grown in the field. High-quality phenotype data remains expensive to produce, but its value is being leveraged by interpreting it in terms of associated genome-wide molecular marker alleles. This workshop will address the current status and plans for phenotype data input, organization, standards, querying, delivery, integration with genotype data, and analysis.
Date: Saturday, January 9, 2016
Time: 10:30 AM-12:40 PM
Room: Golden Ballroom
Organizers:
Clay Birkett and Jean-Luc Jannink
10:30 AM
Managing Phenotypic Data through Cassavabase with Fieldbook App
Alex C. Ogbonna, National Root Crops Research Institute (NRCRI); Agbona Afolabi, International Institute of Tropical Agriculture (IITA); Guillaume J. Bauchet, Boyce Thompson Institute for Plant Research; Bryan Ellerbrock, Boyce Thompson Institute for Plant Research; Naama Menda, Boyce Thompson Institute for Plant Research; Chiedozie Egesi, National Root Crops Research Institute (NRCRI); Adeyemi Olojede, National Root Crops Research Institute (NRCRI); Ismail Rabbi, International Institute of Tropical Agriculture (IITA); Peter Kulakow, International Institute of Tropical Agriculture (IITA); Lukas Mueller, Boyce Thompson Institute for Plant Research

10:50 AM
Genomes To Fields (G2F)
Carolyn Dill, Department of Genetics, Development and Cell Biology, Iowa State University

11:10 AM
GnpIS-Ephesis, the Phenotypic Data Integration Platform for Inra Networks Experimental Data – Data Discovery and Dataset Building Use Cases
Cyril Pommier, INRA - URGI; Michael Alaux, INRA - URGI; Thomas Letellier, INRA - URGI; Célia Michotey, INRA - URGI; Guillaume Cornut, INRA - URGI; Aristide Lebreton, INRA - URGI; Mathieu Labernadière, INRA - URGI; Mathide Lainé, INRA - URGI; Elizabeth Arnaud, Bioversity International; Anne-Francoise Adam-Blondon, INRA - URGI; Hadi Quesneville, INRA - URGI

11:30 AM
Android Apps for Plant Breeding and Genetics #phenoApps
Trevor W. Rife, Kansas State University; Jesse Poland, Kansas State University

11:50 AM
Triticeae Toolbox (T3)
Kevin P. Smith, University of Minnesota

12:10 PM
Breeding Management System (BMS): A User Perspective
M. Cinta Romay, Institute for Genomic Diversity, Cornell University

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