Computer Demo 4

Talks and demonstrations about software and online resources for supporting and advancing research.
Date: Wednesday, January 13, 2016
Time: 10:30 AM-12:40 PM
Room: California
Organizers:
Dave Clements and Brian Smith-White
10:30 AM
C21
BovineMine: A Data Mining Warehouse for the Bos taurus Genome
Christine G. Elsik, Division of Animal Sciences, University of Missouri; Colin M. Diesh, Division of Animal Sciences, University of Missouri; Deepak R. Unni, Division of Animal Sciences, University of Missouri; Aditi Tayal, Division of Animal Sciences, University of Missouri; Hung N. Nguyen, MU Informatics Institute, University of Missouri; Darren E. Hagen, Division of Animal Sciences, University of Missouri

10:50 AM
C22
Desktop BioLegato Applications for Easy NCBI Keyword Queries and BLAST Searches
Brian Fristensky, University of Manitoba; Graham Alvare, University of Manitoba

11:10 AM
C23
The Vigna Genome Server, ‘VigGS’: A Genomic Knowledge Base of the Genus Vigna
Hiroaki Sakai, National Institute of Agrobiological Sciences; Ken Naito, National Institute of Agrobiological Sciences; Yu Takahashi, National Institute of Agrobiological Sciences; Takeshi Itoh, National Institute of Agrobiological Sciences; Norihiko Tomooka, National Institute of Agrobiological Sciences

11:30 AM
C24
Using Wheat BLAST Database to Search for Mutations and Expression
Hans Vasquez-Gross, University of California Davis; Ksenia V Krasileva, The Genome Analysis Centre, The Sainsbury Laboratory; Tyson R. Howell, University of California Davis; Paul C. Bailey, The Genome Analysis Centre; Sarah Ayling, The Genome Analysis Centre; Cristobal Uauy, John Innes Centre; Stephen Pearce, University of California Davis; Jorge Dubcovsky, University of California

11:45 AM
C25
GenSAS v4.0: A Web-Based Platform for Structural and Functional Genome Annotation and Curation
Jodi L. Humann, Washington State University; Stephen P. Ficklin, Washington State University; Taein Lee, Washington State University; Chun-Huai Cheng, Washington State University; Sook Jung, Washington State University; Jill Wegrzyn, Department of Ecology and Evolutionary Biology, University of Connecticut; David Neale, Dept. Plant Sciences University of California Davis; Dorrie Main, Washington State University

12:00 PM
C26
Learn to Use Integrated Genome Browser to Explore, Analyze and Share Data for your Newly Sequenced Genome - an Example from Blueberry
Ann Loraine, University of North Carolina Charlotte; David Norris, University of North Carolina Charlotte; John Eckstein, University of North Carolina Charlotte; Tarun Mall, University of North Carolina Charlotte; Nowlan Freese, University of North Carolina Charlotte; Mason Meyer, University of North Carolina Charlotte

12:15 PM
C27
ProtAnnot: Visualizing Protein Function and Effects of Alternative Transcription
Nowlan Freese, University of North Carolina Charlotte; Tarun Mall, University of North Carolina Charlotte; John Eckstein, University of North Carolina Charlotte; David Norris, University of North Carolina Charlotte; Ann Loraine, University of North Carolina Charlotte

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