Computer Demos (1)

Organizer:
David E. Matthews(USDA-ARS-Cornell University)
Date: Saturday, January 14, 2012
Time: 1:30 PM-3:40 PM
Room: California
1:30 PM
C01
AGDP: A software tool for the analysis of genome differences between populations
Shengwen Wang, Department of Animal Science, University of Minnesota; Li Ma, Department of Animal Science, University of Minnesota; Yang Da, Department of Animal Science, University of Minnesota

1:45 PM
C02
SNPEVG: a graphical tool for SNP effect viewing and graphing
Shengwen Wang, Department of Animal Science, University of Minnesota; Yang Da, Department of Animal Science, University of Minnesota

2:00 PM
C03
Preliminary version of bioinformatics user interface for interpreting SNP-phenotype relationships
Shengwen Wang, Department of Animal Science, University of Minnesota; Hakizumwami Birali Runesha, Research Computing, Office of the Vice President for Research and National Laboratories, The University of Chicago ; Yang Da, Department of Animal Science, University of Minnesota

2:15 PM
C04
VCMap3.0: a comparative genetics viewer designed to transfer annotation, QTL and biological information across species
James Koltes, Iowa State University; Steve G Davis, Bio::Neos, Inc.; Mary Shimoyama, Medical College of Wisconsin; Mindy Dwinell, Medical College of Wisconsin; Anne Kwitek, University of Iowa; James Reecy, Iowa State University

2:30 PM
C05
BioMercatorV4 A complete framework to integrate QTL, meta-QTL and genome annotation
Olivier Sosnowski, INRA/UPS/INA-PG; Johann Joets, INRA/CNRS/Univ Paris-Sud/AgroParisTech

2:45 PM
C06
Use Integrated Genome Browser to explore, analyze, and share genome-scale data sets
Ann Loraine, University of North Carolina - Charlotte; Lance Frohman, Genentech; Alyssa Gulledge, University of North Carolina - Charlotte; Michael Lawrence, Genentech; David Norris, University of North Carolina - Charlotte; Zhong Ren, University of North Carolina - Charlotte; Jeremy Villalobos, University of North Carolina - Charlotte; Hiral Vora, University of North Carolina - Charlotte

3:00 PM
C07
SyMAP: Dynamic Synteny Exploration
William Nelson, University of Arizona/Bio5 Institute