Brachypodium Genomics

Organizer:
David Garvin(USDA-ARS PSRU)
Date: Tuesday, January 17, 2012
Time: 10:20 AM-12:30 PM
Room: Pacific Salon 2
10:20 AM
Transcriptional Regulation of Lignin and Cellulose Biosynthesis in Brachypodium distachyon
Pubudu Handakumbura, University of Massachusetts; Gina M Trabucco, University of Massachusetts; Dominick A Matos, University of Massachusetts; Michael V Veling, University of Massachusetts; Karen S Osmont, University of Massachusetts; Scott J Lee, University of Massachusetts; Tobias I Baskin, University of Massachusetts; Samuel Hazen, University of Massachusetts

10:40 AM
BRACHYTIL, a TILLING Platfom for functional genomics in Brachypodium distachyon
Richard Sibout, INRA-IJPB; Marion Dalmais, INRA-URGV; Sebastien Antelme, INRA-IJPB; Olivier Darracq, INRA-IJPB; Nicolas Oria, INRA-IJPB; Madeleine Bouvier d'Yvoire, INRA-IJPB; Lise Jouanin, INRA-IJPB; Catherine Lapierre, INRA-IJPB; Abdelhafid Bendahmane, INRA-URGV

11:00 AM
Genome Diversity in Brachypodium distachyon: Deep Sequencing of Highly Diverse Natural Accessions
Sean Gordon, USDA, ARS, WRRC; Henry Priest, Donald Danforth Plant Science Center; Ludmila Tyler, University of California, Berkeley/USDA; Doug Bryant, Donald Danforth Plant Science Center; Wendy Schackwitz, DOE Joint Genome Institute; Joel Martin, DOE Joint Genome Institute; Wenqin Wang, Waksman Institute, Rutgers University; Anna Lipzen, DOE Joint Genome Institute; Kerrie Barry, DOE Joint Genome Institute; Antonio Manzaneda, Universidad de Jaen; Christopher Schwartz, University of Wisconsin-Madison; Richard Amasino, University of Wisconsin; David Garvin, USDA-ARS PSRU; Hikmet Budak, Sabanci University; Joachim Messing, Rutgers University; Metin Tuna, Namik Kemal University; Thomas Mitchell-Olds, Duke University; Dan Rokhsar, DOE Joint Genome Institute; Len Pennacchio, DOE Joint Genome Institute; Ana Caicedo, University of Massachusetts; Samuel Hazen, University of Massachusetts; Thomas Jeunger, University of Texas at Austin; Robert Hasterok, University of Silesia; John Doonan, John Innes Centre; Pilar Catalan, University of Zaragoza; Luis Mur, Aberystwyth University; Todd C. Mockler, Donald Danforth Plant Science Center; John Vogel, USDA, ARS, WRRC, Albany, CA

11:20 AM
Cytomolecular Analyses in Brachypodium and Their Role in Sequencing of B. stacei and B. hybridum Genomes
Robert Hasterok, Department of Plant Anatomy and Cytology, Faculty of Biology and Environmental Protection, University of Silesia; Alexander Betekhtin, Department of Plant Anatomy and Cytology, Faculty of Biology and Environmental Protection, University of Silesia; Michael Bevan, John Innes Center; Natalia Borowska, Department of Plant Anatomy and Cytology, Faculty of Biology and Environmental Protection, University of Silesia; Ewa Breda, Department of Plant Anatomy and Cytology, Faculty of Biology and Environmental Protection, University of Silesia; Pilar Catalan, Department of Agriculture (Botany), High Polytechnic School of Huesca, University of Zaragoza; Melanie Febrer, The Genome Analysis Centre; Dominika Idziak, Department of Plant Anatomy and Cytology, Faculty of Biology and Environmental Protection, University of Silesia; Maja Jankowska, Department of Plant Anatomy and Cytology, Faculty of Biology and Environmental Protection, University of Silesia; Glyn Jenkins, Institute of Biological, Environmental and Rural Sciences, Edward Llwyd Building, Aberystwyth University; Tim Langdon, Institute of Biological, Environmental and Rural Sciences, Edward Llwyd Building, Aberystwyth University; Karolina Lesniewska, Department of Plant Anatomy and Cytology, Faculty of Biology and Environmental Protection, University of Silesia; Diana López-Alvarez, Department of Agriculture (Botany), High Polytechnic School of Huesca, University of Zaragoza; Elzbieta Wolny, Department of Plant Anatomy and Cytology, Faculty of Biology and Environmental Protection, University of Silesia; Jonathan Wright, The Genome Analysis Centre

11:40 AM
Genetic and Genomic Analysis of Brachypodium distachyon Resistance to Barley Stripe Mosaic Virus Infection
Yu Cui, China Agricultural University; Naxin Huo, USDA-ARS-WRRC; Jennifer Bragg, USDA-ARS-WRRC; Mingcheng Luo, University of California; Chen Yuan, China Agricultural University; Jingzhong Xie, China Agricultural University; Dawei Li, China Agricultural University; Yong Q. Gu, USDA-ARS-WRRC; John Vogel, USDA-ARS-WRRC; David Garvin, USDA-ARS PSRU; Andrew O. Jackson, University of California-Berkeley; Zhiyong Liu, China Agricultural University

12:00 PM
Phenotyping the Shoot and Root Diversity of Brachypodium distachyon to Accelerate Plant Biofuel Breeding
Richard Poire, CSIRO Plant Industry HRPPC; Vincent Chochois, CSIRO; Solene Callarec, CSIRO ; Xavier Sirault, CSIRO Plant Industry - High Resolution Plant Phenomics Centre ; John Vogel, USDA, ARS, Western Regional Research Center; Michelle Watt, CSIRO/Black Mountain Laboratories; Robert Furbank, CSIRO Plant Industry - High Resolution Plant Phenomics Centre

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